PDB entry 7nog

View 7nog on RCSB PDB site
Description: structure of the mature rsv ca lattice: group iii, hexamer-hexamer interface, class 4'5
Deposited on 2021-02-25, released 2021-04-21
The last revision was dated 2021-06-09, with a file datestamp of 2021-06-04.
Experiment type: EM
Resolution: 7.8 Å
R-factor: N/A
AEROSPACI score: -0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Capsid protein p27, alternate cleaved 1
    Species: Rous sarcoma virus (strain Prague C) [TaxId:11888]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7nogA (A:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogA (A:)
pwadimqgpsesfvdfanrlikavegsdlppsarapviidcfrqksqpdiqqlirtapst
lttpgeiikyvldrqkta

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7nogB (B:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogB (B:)
awtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvilgpapyalw
mdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgqaallrpgel
vaitasalqafrevarlaepwadimqgpsesfvdfanrlikavegsdlppsarapviidc
frqksqpdiqqlirtapstlttpgeiikyvldrqkta

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7nogC (C:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogC (C:)
awtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvilgpapyalw
mdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgqaallrpgel
vaitasalqafrevarlae

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7nogD (D:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogD (D:)
pwadimqgpsesfvdfanrlikavegsdlppsarapviidcfrqksqpdiqqlirtapst
lttpgeiikyvldrqkta

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7nogE (E:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogE (E:)
awtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvilgpapyalw
mdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgqaallrpgel
vaitasalqafrevarlaepwadimqgpsesfvdfanrlikavegsdlppsarapviidc
frqksqpdiqqlirtapstlttpgeiikyvldrqkta

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7nogF (F:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogF (F:)
awtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvilgpapyalw
mdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgqaallrpgel
vaitasalqafrevarlae

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7nogG (G:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogG (G:)
pwadimqgpsesfvdfanrlikavegsdlppsarapviidcfrqksqpdiqqlirtapst
lttpgeiikyvldrqkta

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7nogH (H:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogH (H:)
awtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvilgpapyalw
mdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgqaallrpgel
vaitasalqafrevarlae

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7nogI (I:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogI (I:)
pwadimqgpsesfvdfanrlikavegsdlppsarapviidcfrqksqpdiqqlirtapst
lttpgeiikyvldrqkta

  • Chain 'J':
    Sequence, based on SEQRES records:
    >7nogJ (J:)
pvviktegpawtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvi
lgpapyalwmdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgq
aallrpgelvaitasalqafrevarlaepagpwadimqgpsesfvdfanrlikavegsdl
ppsarapviidcfrqksqpdiqqlirtapstlttpgeiikyvldrqkta

    Sequence, based on observed residues (ATOM records):
    >7nogJ (J:)
awtplepklitrladtvrtkglrspitmaevealmsspllphdvtnlmrvilgpapyalw
mdawgvqlqtviaaatrdprhpangqgrgertnlnrlkgladgmvgnpqgqaallrpgel
vaitasalqafrevarlae