PDB entry 7ndj

View 7ndj on RCSB PDB site
Description: crystal structure of zc3h12c pin-ccch zn finger domain with rna heptamer
Deposited on 2021-02-01, released 2021-05-19
The last revision was dated 2021-06-02, with a file datestamp of 2021-05-28.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Probable ribonuclease ZC3H12C
    Species: Mus musculus [TaxId:10090]
    Gene: Zc3h12c, Kiaa1726
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5DTV4 (0-End)
      • conflict (9)
  • Chain 'B':
    Compound: Probable ribonuclease ZC3H12C
    Species: Mus musculus [TaxId:10090]
    Gene: Zc3h12c, Kiaa1726
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5DTV4 (0-191)
      • conflict (9)
  • Chain 'C':
    Compound: RNA (5'-r(*up*up*ap*up*up*ap*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ZN, EDO, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7ndjA (A:)
genlrpvvingsnvamshgnkevfscrgiklavdwflerghkditvfvpawrkeqsrpda
litdqeilrklekekilvftpsrrvqgrrvvcyddrfivklafesdgiivsndnyrdlan
ekpewkkfiderllmysfvndkfmppddplgrhgpsldnflrkkpivpehkkqpcpygkk
ctyghkckyyhp

    Sequence, based on observed residues (ATOM records):
    >7ndjA (A:)
genlrpvvingsnvamshgnkevfscrgiklavdwflerghkditvfvpawrkeqsrpda
litdqeilrklekekilvftpsrrvqgrrvvcyddrfivklafesdgiivsndnyrdlan
ekpewkkfiderllmysfvndkfmppddplgrhgpsldnflrkkpi

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >7ndjB (B:)
genlrpvvingsnvamshgnkevfscrgiklavdwflerghkditvfvpawrkeqsrpda
litdqeilrklekekilvftpsrrvqgrrvvcyddrfivklafesdgiivsndnyrdlan
ekpewkkfiderllmysfvndkfmppddplgrhgpsldnflrkkpivpehkkqpcpygkk
ctyghkckyyhp

  • Chain 'C':
    No sequence available.