PDB entry 7n0r

View 7n0r on RCSB PDB site
Description: Structure of the SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2
Class: viral protein/immune system
Keywords: SARS-CoV-2, nanobody, nucleocapsid, VIRUS, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2021-05-25, released 2021-06-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-02, with a file datestamp of 2021-05-28.
Experiment type: XRAY
Resolution: 1.42 Å
R-factor: N/A
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC9 (3-128)
      • expression tag (2)
  • Chain 'B':
    Compound: nucleoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC9 (3-128)
      • expression tag (2)
  • Chain 'C':
    Compound: Single-domain antibody C2
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 7N0R
    Domains in SCOPe 2.08: d7n0rc1, d7n0rc2
  • Chain 'D':
    Compound: Single-domain antibody C2
    Species: Lama glama [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 7N0R
    Domains in SCOPe 2.08: d7n0rd1, d7n0rd2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7n0rC (C:)
maevqlqasggglvrpggslrlscaasgftfssyammwvrqapgkglewvsainggggst
syadsvkgrftisrdnakntlylqmnslkpedtavyycakyqaavhqekedywgqgtqvt
vssaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7n0rC (C:)
evqlqasggglvrpggslrlscaasgftfssyammwvrqapgkglewvsainggggstsy
adsvkgrftisrdnakntlylqmnslkpedtavyycakyqaavhqekedywgqgtqvtvs
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  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7n0rD (D:)
maevqlqasggglvrpggslrlscaasgftfssyammwvrqapgkglewvsainggggst
syadsvkgrftisrdnakntlylqmnslkpedtavyycakyqaavhqekedywgqgtqvt
vssaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7n0rD (D:)
evqlqasggglvrpggslrlscaasgftfssyammwvrqapgkglewvsainggggstsy
adsvkgrftisrdnakntlylqmnslkpedtavyycakyqaavhqekedywgqgtqvtvs
saa