PDB entry 7mjf

View 7mjf on RCSB PDB site
Description: Crystal structure of Candidatus Liberibacter solanacearum dihydrodipicolinate synthase with pyruvate and succinic semi-aldehyde bound in active site
Class: lyase
Keywords: dihydrodipicolinate, lyase, Liberibacter
Deposited on 2021-04-20, released 2021-07-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-14, with a file datestamp of 2021-07-09.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mjfa_
  • Chain 'B':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mjfb_
  • Chain 'C':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mjfc_
  • Chain 'D':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mjfd_
  • Chain 'E':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mjfe_
  • Chain 'F':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7mjff_
  • Heterogens: E8U, ZGM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7mjfA (A:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvkdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcag

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7mjfB (B:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvkdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcag

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7mjfC (C:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvkdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcag

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7mjfD (D:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvkdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcag

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7mjfE (E:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvkdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcag

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7mjfF (F:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvkdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcag