PDB entry 7mge

View 7mge on RCSB PDB site
Description: structure of c9orf72:smcr8:wdr41 in complex with arf1
Deposited on 2021-04-12, released 2021-06-23
The last revision was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: EM
Resolution: 3.94 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: WD repeat-containing protein 41
    Species: Homo sapiens [TaxId:9606]
    Gene: WDR41, MSTP048
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Guanine nucleotide exchange protein SMCR8
    Species: Homo sapiens [TaxId:9606]
    Gene: SMCR8
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Guanine nucleotide exchange C9orf72
    Species: Homo sapiens [TaxId:9606]
    Gene: C9orf72
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ADP-ribosylation factor 1
    Species: Homo sapiens [TaxId:9606]
    Gene: ARF1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P84077 (2-165)
      • expression tag (0-1)
  • Heterogens: GDP, BEF, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7mgeA (A:)
    mlrwligggrepqglaeksplqtigeeqtqnpytellvlkahhdivrflvqlddyrfasa
    gddgivvvwnaqtgekllelnghtqkitaiitfpslesceeknqliltasadrtvivwdg
    dttrqvqriscfqstvkcltvlqrldvwlsggndlcvwnrkldllcktshlsdtgisalv
    eipkncvvaavgkeliifrlvaptegslewdilevkrlldhqdnilslinvndlsfvtgs
    hvgeliiwdaldwtmqayernfwdpspqldtqqeiklcqksndisihhftcdeenvfaav
    grglyvyslqmkrviacqktahdsnvlhvarlpnrqliscsedgsvriwelrekqqlaae
    pvptgffnmwgfgrvskqasqpvkkqqenatscsleligdlighsssvemflyfedhglv
    tcsadhliilwkngeresglrslrlfqkleengdlylav
    

    Sequence, based on observed residues (ATOM records):
    >7mgeA (A:)
    tqnpytellvlkahhdivrflvqlddyrfddgivvvwnaqtgekllelnghtqkitaiit
    fpnqliltasadrtvivwdgrqvqriscfqstvkcltvlqrldvwlsndlcvwnrkldll
    cktshlsdtgisalveipkncvvaavgkeliifrlvapslewdilevkrlldhqdnilsl
    invndlsfvtgshvgeliiwdaldwtmqayernfdisihhftcdeenvfaavgrglyvys
    lqmkrviacqktahdsnvlhvarlpnrqliscsedgsvriwelrekleligdlighsssv
    emflyfedhglvtcsadhliilwkngeresglrslrlfqkleengdlyl
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7mgeB (B:)
    misapdvvaftkeeeyeeepynepalpeeysvplfpfasqganpwsklsgakfsrdfili
    sefseqvgpqplltipndtkvfgtfdlnyfslrimsvdyqasfvghppgsaypklnfved
    skvvlgdskegafayvhhltlydleargfvrpfcmayisadqhkimqqfqelsaefsras
    eclktgnrkafagelekklkdldytrtvlhteteiqkkandkgfyssqaiekanelasve
    ksiiehqdllkqirsyphrklkghdlcpgemehiqdqasqasttsnpdesadtdlytcrp
    aytpklikakstkcfdkklktleelcdteyftqtlaqlshiehmfrgdlcylltsqidra
    llkqqhitnflfedfvevddrmvekqesipskpsqdrppsssleecpipkvlisvgsyks
    svesvlikmeqelgdeeykevevtelssfdpqenldyldmdmkgsissgesievlgteks
    tsvlsksdsqasltvplspqvvrskavshrtisedsievlstcpsealipddfkasypsa
    ineeesypdgnegairfqasisppelgeteegsientpsqidssccigkesdgqlvlpst
    pahthsdedgvvssppqrhrqkdqgfrvdfsvenanpssrdnscegfpayeldpshllas
    rdisktsldnysdttsyvssvastssdripsaypaglssdrhkkragqnalkfirqypfa
    hpaiysllsgrtlvvlgedeaivrklvtalaifvpsygcyakpvkhwassplhimdfqkw
    kliglqrvaspagagtlhalsrysrytsildldnktlrcplyrgtlvprladhrtqikrg
    styylhvqsmltqlcskaflytfchhlhlpthdketeelvasrqmsflkltlglvnedvr
    vvqylaellklhymqespgtshpmlrfdyvpsflyki
    

    Sequence, based on observed residues (ATOM records):
    >7mgeB (B:)
    akfsrdfilisefkvfgtfdlnyfslrimsvdyqasfvghppgslnfvedskvvlgdske
    gafayvhhltlydrgfvrpfcmayisadqhkimqqfqelsaefsraseclktgnrkafag
    elekklkdldytrtvlhteteiqkkayssqaiekanelasveksiiehqdllkqirteyf
    tqtlaqlshiehmfrgdlcylltsqidrallkqqhitnflfedfagqnalkfiqypfahp
    aiysllsgrtlvvlgedeaivrklvtalaifvpsygcyakpvkhwassplhimdfqkwkl
    iglqrvagtlhalsrysrytsildldnktlcplyrgtlvprladrtqikrgstyylhvqs
    mltqlcskaflytfchhlhlpteelvasrqmsflkltlglvnedvrvvqylaellklhym
    qespgtshpmlrfdyvpsflyk
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7mgeC (C:)
    mstlcpppspavakteialsgkspllaatfaywdnilgprvrhiwapkteqvllsdgeit
    flanhtlngeilrnaesgaidvkffvlsekgviivslifdgnwngdrstyglsiilpqte
    lsfylplhrvcvdrlthiirkgriwmhkerqenvqkiilegtermedqgqsiipmltgev
    ipvmellssmkshsvpeeidiadtvlndddigdschegfllnaisshlqtcgcsvvvgss
    aekvnkivrtlclfltpaerkcsrlceaessfkyesglfvqgllkdstgsfvlpfrqvmy
    apyptthidvdvntvkqmppchehiynqrrymrseltafwratseedmaqdtiiytdesf
    tpdlnifqdvlhrdtlvkafldqvfqlkpglslrstflaqfllvlhrkaltlikyieddt
    qkgkkpfkslrnlkidldltaegdlniimalaekikpglhsfifgrpfytsvqerdvlmt
    f
    

    Sequence, based on observed residues (ATOM records):
    >7mgeC (C:)
    akteialsgkspllaatfaywdhiwapkteqvllsdgeitflanhtlngeilrnaesgai
    dvkffvlsekgviivslifdgngdrstyglsiilpqtelsfylplhrvcvdrlthiirkg
    riwmhkiipmltgevipvmellssmkshsvpeeidiadtvlndddigdschegfllnais
    shlqtcgcsvvvgssaekvnkivrtlclfltpaerkcsrlceaessfkyesglfvqgllk
    dstgsfvlpfrqvmyapthidvdvntvkqmppcdtlvkafldqvfqlkpglslrstflaq
    fllvlhrkaltlikyieddtqkgkkpfkslrnlkidldltaegdlniimalaekikpglh
    sfifg
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >7mgeE (E:)
    atemrilmvgldaagkttilyklklgeivttiptigfnvetveyknisftvwdvggqdki
    rplwrhyfqntqglifvvdsndrervneareelmrmlaedelrdavllvfankqdlpnam
    naaeitdklglhslrhrnwyiqatcatsgdglyegldwlsnqlrnq