PDB entry 7mc9

View 7mc9 on RCSB PDB site
Description: X-RAY STRUCTURE OF PEDV PAPAIN-LIKE PROTEASE 2 bound to UB-PA
Class: hydrolase
Keywords: coronavirus, PLP, PLP2, papain-like protease, PEDV, UB-PA, complex, cysteine-protease, HYDROLASE
Deposited on 2021-04-01, released 2021-07-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7
    • expression tag (0-3)
• Chain 'B':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9b_
• Chain 'C':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7 (4-236)
    • expression tag (0-3)
• Chain 'D':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9d_
• Chain 'E':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7 (4-236)
    • expression tag (0-3)
• Chain 'F':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9f_
• Chain 'G':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7 (4-236)
    • expression tag (0-3)
• Chain 'H':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9h_
• Chain 'I':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7 (4-236)
    • expression tag (0-3)
• Chain 'J':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9j_
• Chain 'K':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7
    • expression tag (0-3)
• Chain 'L':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9l_
• Chain 'M':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7 (4-236)
    • expression tag (0-3)
• Chain 'N':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9n_
• Chain 'O':
  Compound: 3C-like proteinase
  Species: Porcine epidemic diarrhea virus [TaxId:28295]
  Gene: orf1ab
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A0S3MQV7 (4-236)
    • expression tag (0-3)
• Chain 'P':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG47 (0-74)
  Domains in SCOPe 2.08: d7mc9p_
• Heterogens: ZN, AYE, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9B (B:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9D (D:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg
  

  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9F (F:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9H (H:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg
  

  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9J (J:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg
  

  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9L (L:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg
  

  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'N':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9N (N:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg
  

  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >7mc9P (P:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrg