PDB entry 7m2x

View 7m2x on RCSB PDB site
Description: open conformation of the yeast wild-type gamma-turc
Deposited on 2021-03-17, released 2021-05-12
The last revision was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tubulin gamma chain
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: TUB4, YLR212C, L8167.21
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: tubulin gamma chain
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: TUB4, YLR212C, L8167.21
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: spindle pole body component spc97
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SPC97, YHR172W
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: spindle pole body component spc98
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SPC98, YNL126W, N1222, N1879
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: Spindle pole body component 110
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SPC110, NUF1, XCM1, YDR356W, D9476.3
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GDP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7m2xA (A:)
    mggeiitlqagqcgnhvgkflwsqlakehaigtdglsqlpdssterdddtkpffrensrn
    kftpraimmdsepsviadventfrgffdprntwvasdgasagnswangydigtrnqddil
    nkidkeidstdnfegfqllhsvaggtgsglgsnllealcdrypkkilttysvfparssev
    vvqsyntilalrrliedsdatvvfdnasllnisgkvfrnpnidlqhtnqlistiissvtn
    sirfpsymyssmssiystlipspelhflspsftpftsdyihddiahkghssydvmldlld
    psnslvstamnnptyfnvyntiignveprqisramtklqqrikfpswsssamhvnigrrs
    pylplqpnenevsgmmlsnmstvvnvfenacntfdkvfakgaflnnynvgdlfqsmqnvq
    defaesrevvqslmedyvaaeqdsylddvlvddenmvgeleedldadgdhklv
    

    Sequence, based on observed residues (ATOM records):
    >7m2xA (A:)
    geiitlqagqcgnhvgkflwsqlakehaigtdglsqlpdssterdddtkpffrensrnkf
    tpraimmdsepsviadventfrgffdprntwvasdgasagnswangydigtrnqddilnk
    idkeidstdnfegfqllhsvaggtgsglgsnllealcdrypkkilttysvfparssevvv
    qsyntilalrrliedsdatvvfdnasllnisgkvfrnpnidlqhtnqlistiissvtnsi
    rfpsymyssmssiystlipspelhflspsftpftsdhkghssydvmldlldpsnslvsta
    mnnptyfnvyntiignveprqisramtklqqrikfpswsssamhvnigrrspylplqpne
    nevsgmmlsnmstvvnvfenacntfdkvfakgaflnnynvgdlfqsmqnvqdefaesrev
    vqslmedyvaaeqdsylddvlvdd
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7m2xB (B:)
    mggeiitlqagqcgnhvgkflwsqlakehaigtdglsqlpdssterdddtkpffrensrn
    kftpraimmdsepsviadventfrgffdprntwvasdgasagnswangydigtrnqddil
    nkidkeidstdnfegfqllhsvaggtgsglgsnllealcdrypkkilttysvfparssev
    vvqsyntilalrrliedsdatvvfdnasllnisgkvfrnpnidlqhtnqlistiissvtn
    sirfpsymyssmssiystlipspelhflspsftpftsdyihddiahkghssydvmldlld
    psnslvstamnnptyfnvyntiignveprqisramtklqqrikfpswsssamhvnigrrs
    pylplqpnenevsgmmlsnmstvvnvfenacntfdkvfakgaflnnynvgdlfqsmqnvq
    defaesrevvqslmedyvaaeqdsylddvlvddenmvgeleedldadgdhklv
    

    Sequence, based on observed residues (ATOM records):
    >7m2xB (B:)
    mggeiitlqagqcgnhvgkflwsqlakehaigtdglsqlpdssterdddtkpffrensrn
    kftpraimmdsepsviadventfrgffdprntwvasdgasagnswangydigtrnqddil
    nkidkeidstdnfegfqllhsvaggtgsglgsnllealcdrypkkilttysvfparssev
    vvqsyntilalrrliedsdatvvfdnasllnisgkvfrnpnidlqhtnqlistiissvtn
    sirfpsymyssmssiystlipspelhflspsftpftsdhkghssydvmldlldpsnslvs
    tamnnptyfnvyntiignveprqisramtklqqrikfpswsssamhvnigrrspylplqp
    nenevsgmmlsnmstvvnvfenacntfdkvfakgaflnnynvgdlfqsmqnvqdefaesr
    evvqslmedyvaaeqdsylddvlvdd
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7m2xC (C:)
    meikevddraellrytnnipllgklvnhqplwstnpklksfslekisapdqrrvqealvv
    kdllnvliglegtyiryfndyepsdpetpiefkiakkmdpsfktfsrrivrygkqymilt
    rayekwsdtsfgmvlqrfayeirrfledvylktlverlerdfnkvpnfsireleqiinet
    evnkqmellyniyeeifreieerrtnqssqedfnnfmdsmknesslhlrlmvafdttvyp
    vpkggailkifqqkilenlgdrssvmflkkllnnisqdyctmlyewltqgilndpyqefm
    tyddlegktdnifdtrdrawdtqyfirkdvllrdcdseedknllfkmlrtgillkvvras
    lqiptipsnssditiqeindfadlmegsnlelyvdkcysraneiflklffqgydlinvlk
    hlqqiflgyqsghnvlkfltknmgeltkhyrndnnanydkllqnfelerqsenpnnlmrq
    llmiqfdtetlpqvlshylqiypevpennsanddsdplmhannfknmnailfdelskert
    gayhgsnlelytpksaiyhlkfdinipyplniiisrtcmikyqiilryqlvlqyhsrlld
    etwmdlnktpswkyrgyshtvkrrivratrvlhakmnhfiktimeyfnqnvidkevysle
    kcyrnptlavaiqneleggltnimtnrclsdliplqlqifdivykfckfiksmraklcql
    dpvlyekhksgmmktlnegyrtnnggqedvgyqedaaleliqklieyisnassifrkcli
    nftqelstekfdfydsssvdaagiervlysivpprsasassqr
    

    Sequence, based on observed residues (ATOM records):
    >7m2xC (C:)
    meikevddraellrytnnipllgklvnhqplwstnpklksfslekisapdqrrvqealvv
    kdllnvliglegtyiryfndyepsdpetpiefkiakkmdpsfktfsrrivrygkqymilt
    rayekwsdtsfgmvlqrfayeirrfledvylktlverlerdfnkvpnfsireleqiinet
    evnkqmellyniyeeifreieerrtnqsshlrlmvafdttvypvpkggailkifqqkile
    nlgdrssvmflkkllnnisqdyctmlyewltqgilndpyqefmtyddlerawdtqyfirk
    dvllrdcdseedknllfkmlrtgillkvvraslqiptipsnssditiqeindfadlmegs
    nlelyvdkcysraneiflklffqgydlinvlkhlqqiflgyqsghnvlkfltknmgeltk
    hyrndnnanydkllqnfelerqsenpnnlmrqllmiqfdtetlpqvlshylqiypaiyhl
    kfdinipyplniiisrtcmikyqiilryqlvlqyhsrlldetwmdlnktpswkyrgysht
    vkrrivratrvlhakmnhfiktimeyfnqnvidkevyslekcyrnptlavaiqneleggl
    tnimtnrclsdliplqlqifdivykfckfiksmraklcqldpvlyegyqedaaleliqkl
    ieyisnassifrkclinftqelstekfaagiervlysivpp
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7m2xD (D:)
    meleptlfgiiealapqllsqshlqtfvsdvvnllrsstksatqlgplidfyklqsldsp
    ettimwhkiekfldalfgiqntddmvkylsvfqsllpsnyrakivqkssglnmenlanhe
    hllspvrapsiyteasfenmdrfserrsmvsspnryvpsstyssvtlrqlsnpyyvntip
    eedilkyvsytllattsalfpfdheqiqipskipnfesgllhlifeagllyqslgykvek
    frmlnispmkkaliieiseelqnytafvnnlvssgtvvslkslyreiyeniirlriycrf
    tehleelsgdtflielnifkshgdltirkiatnlfnsmislyyeylmnwltkgllratyg
    effiaentdtngtdddfiyhipiefnqervpafipkelaykifmigksyiflekyckevq
    wtnefskkyhvlyqsnsyrgistnffeiindqyseivnhtnqilnqkfhyrdvvfalkni
    llmgksdfmdaliekandilatpsdslpnykltrvlqeavqlsslrhlmnsprnssving
    ldarvldlghgsvgwdvftldyilypplslvlnvnrpfgrkeylrifnflwrfkknnyfy
    qkemlksndiirsfkkirgynplirdiinklsrisilrtqfqqfnskmesyylnciieen
    fkemtrklqrtenksqnqfdlirlnngtielngiltpkaevltksssskpqkhaiektln
    idelesvhntfltnilshklfatntseisvgdysgqpyptslvlllnsvyefvkvycnln
    digyeifikmnlndheasngllgkfntnlkeivsqyknfkdrlyifradlkndgdeelfl
    lskslr
    

    Sequence, based on observed residues (ATOM records):
    >7m2xD (D:)
    ssvtlrqlsnpyyvntipeedilkyvsytllattsalfpfdheqiqipskipnfesgllh
    lifeagllyqslgykvekfrmlnispmkkaliieiseelqnytafvnnlvssgtvvslks
    lyreiyeniirlriycrftehleelsgdtflielnifkshgdltirkiatnlfnsmisly
    yeylmnwltkgllratygeffiaentdtngtdddfiyhipiefnqervpafipkelayki
    fmigksyiflekyckevqwtnefskkyhvlyqsnsyrgistnffeiindqyseivnhtnq
    ilnqkfhyrdvvfalknillmgksdfmdaliekandilatpsdslpnykltrvlqeavql
    sslrhlmnsprnssvingldarvldlghgsvgwdvftldyilypplslvlnvnrpfgrke
    ylrifnflwrfkknnyfyqkemlksndiirsfkkirgynplirdiinklsrisilrtqfq
    qfnskmesyylnciieenfkemtrklqrtenksqnqfdlirlnngtielngiltpkaevl
    tiektlnidelesvhntfltnilshklfatntseisvgdysgqpyptslvlllnsvyefv
    kvycnlndigyeifikmnlndheasngllgkfntnlkeivsqyknfkdrlyifradlknd
    gdeelfllskslr
    

  • Chain 'U':
    Sequence, based on SEQRES records:
    >7m2xU (U:)
    mdeashlpngslknmeftpvgfikskrnttqtqvvsptkvpnanngdenegpvkkrqrrs
    iddtidstrlfseasqfddsfpeikanippsprsgnvdksrkrnliddlkkdvpmsqplk
    eqevrehqmkkerfdraleskllgkrhityansdisnkelyineikslkheikelrkekn
    dtlnnydtleeetddlknrlqalekeldaknkivnsrkvd
    

    Sequence, based on observed residues (ATOM records):
    >7m2xU (U:)
    dvpmsqplkeqevrehqmkkerfdraleskllg