SCOPe 2.08: Structural Classification of Proteins

PDB entry 7m0j

View 7m0j on RCSB PDB site
Description: sars-cov-2 u1s2q all down rbd state spike protein trimer - asymmetric refinement
Deposited on 2021-03-11, released 2021-03-31
The last revision was dated 2021-04-07, with a file datestamp of 2021-04-02.
Experiment type: EM
Resolution: 3.52 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - engineered mutation (554)
  - engineered mutation (556)
  - engineered mutation (839-840)
  - engineered mutation (970-971)
Chain 'B':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - engineered mutation (554)
  - engineered mutation (556)
  - engineered mutation (839-840)
  - engineered mutation (970-971)
Chain 'C':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - engineered mutation (554)
  - engineered mutation (556)
  - engineered mutation (839-840)
  - engineered mutation (970-971)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>7m0jA (A:)
vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng
tkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqf
cndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss
sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqt
snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfs
tfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvia
wnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy
gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltes
nkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdv
nctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyq
tqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts
vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppik
dfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqky
igltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnv
lyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss
vlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg
qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvf
vsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldky
fknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyipe
aprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsgggg
sggsawshpqfek

Sequence, based on observed residues (ATOM records):

>7m0jA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtkyigltvlpplltdemiaqytsallagtitsgwtfgagaalq
ipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpelds

Chain 'B':
Sequence, based on SEQRES records:

>7m0jB (B:)
vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng
tkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqf
cndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss
sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqt
snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfs
tfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvia
wnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy
gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltes
nkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdv
nctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyq
tqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts
vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppik
dfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqky
igltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnv
lyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss
vlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg
qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvf
vsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldky
fknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyipe
aprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsgggg
sggsawshpqfek

Sequence, based on observed residues (ATOM records):

>7m0jB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtkyigltvlpplltdemiaqytsallagtitsgwtfgagaalq
ipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpelds

Chain 'C':
Sequence, based on SEQRES records:

>7m0jC (C:)
vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng
tkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqf
cndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss
sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqt
snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfs
tfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvia
wnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy
gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltes
nkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdv
nctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyq
tqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts
vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppik
dfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqky
igltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnv
lyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss
vlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg
qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvf
vsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldky
fknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyipe
aprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsgggg
sggsawshpqfek

Sequence, based on observed residues (ATOM records):

>7m0jC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtkyigltvlpplltdemiaqytsallagtitsgwtfgagaalq
ipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpelds