PDB entry 7lsx

View 7lsx on RCSB PDB site
Description: cryo-em structure of 13s proteasome core particle assembly intermediate purified from pre3-1 proteasome mutant (g34d)
Deposited on 2021-02-18, released 2021-04-14
The last revision was dated 2021-05-26, with a file datestamp of 2021-05-21.
Experiment type: EM
Resolution: 3.61 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Proteasome subunit alpha type-1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Proteasome subunit alpha type-2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Proteasome subunit alpha type-3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Proteasome subunit alpha type-4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Proteasome subunit alpha type-5
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Proteasome subunit alpha type-6
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Proteasome subunit alpha type-7
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Proteasome maturation factor UMP1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Proteasome subunit beta type-2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Proteasome subunit beta type-3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Proteasome subunit beta type-4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Proteasome chaperone 1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Proteasome assembly chaperone 2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7lsxA (A:)
    msgaaaasaagydrhitifspegrlyqveyafkatnqtninslavrgkdctvvisqkkvp
    dklldpttvsyifcisrtigmvvngpipdarnaalrakaeaaefrykygydmpcdvlakr
    manlsqiytqraymrplgviltfvsvdeelgpsiyktdpagyyvgykatatgpkqqeitt
    nlenhfkkskidhineeswekvvefaithmidalgtefskndlevgvatkdkfftlsaen
    ieerlvaiaeqd
    

    Sequence, based on observed residues (ATOM records):
    >7lsxA (A:)
    asaagydrhitifspegrlyqveyafkatnqtninslavrgkdctvvisqkkvpdklldp
    ttvsyifcisrtigmvvngpipdarnaalrakaeaaefrykygydmpcdvlakrmanlsq
    iytqraymrplgviltfvsvdeelgpsiyktdpagyyvgykatatgpkqqeittnlenhf
    kkskidhineeswekvvefaithmidalgtefskndlevgvatkdkfftlsaenieerlv
    aiaeq
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7lsxB (B:)
    mtdrysfslttfspsgklgqidyaltavkqgvtslgikatngvviatekksssplamset
    lskvslltpdigavysgmgpdyrvlvdksrkvahtsykriygeypptkllvsevakimqe
    atqsggvrpfgvslliaghdefngfslyqvdpsgsyfpwkataigkgsvaaktflekrwn
    deleledaihialltlkesvegefngdtielaiigdenpdllgytgiptdkgprfrklts
    qeindrleal
    

    Sequence, based on observed residues (ATOM records):
    >7lsxB (B:)
    drysfslttfspsgklgqidyaltavkqgvtslgikatngvviatekksssplamsetls
    kvslltpdigavysgmgpdyrvlvdksrkvahtsykriygeypptkllvsevakimqeat
    qsggvrpfgvslliaghdefngfslyqvdpsgsyfpwkataigkgsvaaktflekrwnde
    leledaihialltlkesvegefngdtielaiigdenpdllgytgiptdkgprfrkltsqe
    indrlea
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7lsxC (C:)
    mgsrrydsrttifspegrlyqveyalesishagtaigimasdgivlaaerkvtstlleqd
    tsteklyklndkiavavagltadaeilintarihaqnylktynedipveilvrrlsdikq
    gytqhgglrpfgvsfiyagyddrygyqlytsnpsgnytgwkaisvgantsaaqtllqmdy
    kddmkvddaielalktlskttdssaltydrlefatirkgandgevyqkifkpqeikdilv
    ktgitkkdedeeadedmk
    

    Sequence, based on observed residues (ATOM records):
    >7lsxC (C:)
    ydsrttifspegrlyqveyalesishagtaigimasdgivlaaerkvtstlleqdtstek
    lyklndkiavavagltadaeilintarihaqnylktynedipveilvrrlsdikqgytqh
    gglrpfgvsfiyagyddrygyqlytsnpsgnytgwkaisvgantsaaqtllqmdykddmk
    vddaielalktlskttdssaltydrlefatirkevyqkifkpqeikdilvktgi
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7lsxD (D:)
    msgydralsifspdghifqveyaleavkrgtcavgvkgkncvvlgcerrstlklqdtrit
    pskvskidshvvlsfsglnadsriliekarveaqshrltledpvtveyltryvagvqqry
    tqsggvrpfgvstliagfdprddepklyqtepsgiysswsaqtigrnsktvrefleknyd
    rkeppatveecvkltvrsllevvqtgaknieitvvkpdsdivalsseeinqyvtqieqek
    qeqqeqdkkkksnh
    

    Sequence, based on observed residues (ATOM records):
    >7lsxD (D:)
    ydralsifspdghifqveyaleavkrgtcavgvkgkncvvlgcerrstlklqdtritpsk
    vskidshvvlsfsglnadsriliekarveaqshrltledpvtveyltryvagvqqrytqs
    ggvrpfgvstliagfdprddepklyqtepsgiysswsaqtigrnsktvrefleknydrke
    ppatveecvkltvrsllevvqtgaknieitvvkpdsdivalsseeinqyvtqieq
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7lsxE (E:)
    mfltrseydrgvstfspegrlfqveysleaiklgstaigiatkegvvlgvekratsplle
    sdsiekiveidrhigcamsgltadarsmiehartaavthnlyydedinvesltqsvcdla
    lrfgegasgeerlmsrpfgvalliaghdaddgyqlfhaepsgtfyrynakaigsgsegaq
    aellnewhssltlkeaellvlkilkqvmeekldennaqlscitkqdgfkiydnektaeli
    kelkekeaaespeeadvems
    

    Sequence, based on observed residues (ATOM records):
    >7lsxE (E:)
    mfltrseydrgvstfspegrlfqveysleaiklgstaigiatkegvvlgvekratsplle
    sdsiekiveidrhigcamsgltadarsmiehartaavthnlyydedinvesltqsvcdla
    lrfgegasgeerlmsrpfgvalliaghdaddgyqlfhaepsgtfyrynakaigsgsegaq
    aellnewhssltlkeaellvlkilkqvmeekldennaqlscitkqdgfkiydnektaeli
    kelkekeaa
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >7lsxF (F:)
    mfrnnydgdtvtfsptgrlfqveyaleaikqgsvtvglrsnthavlvalkrnadelssyq
    kkiikcdehmglslaglapdarvlsnylrqqcnysslvfnrklaveraghllcdkaqknt
    qsyggrpygvglliigydksgahllefqpsgnvtelygtaigarsqgaktylertldtfi
    kidgnpdelikagveaisqslrdesltvdnlsiaivgkdtpftiydgeavakyi
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7lsxG (G:)
    mtsigtgydlsnsvfspdgrnfqveyavkavengttsigikcndgvvfaveklitskllv
    pqknvkiqvvdrhigcvysglipdgrhlvnrgreeaasfkklyktpipipafadrlgqyv
    qahtlynsvrpfgvstifggvdkngahlymlepsgsywgykgaatgkgrqsakaeleklv
    dhhpeglsareavkqaakiiylahednkekdfeleiswcslsetnglhkfvkgdllqeai
    dfaqkeingdddededdsdnvmssddenapvatnanattdqegdihle
    

    Sequence, based on observed residues (ATOM records):
    >7lsxG (G:)
    tsigtgydlsnsvfspdgrnfqveyavkavengttsigikcndgvvfaveklitskllvp
    qknvkiqvvdrhigcvysglipdgrhlvnrgreeaasfkklyktpipipafadrlgqyvq
    ahtlynsvrpfgvstifggvdkngahlymlepsgsywgykgaatgkgrqsakaeleklvd
    hhpeglsareavkqaakiiylahednkekdfeleiswcslsetnglhkfvkgdllqeaid
    faqke
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7lsxH (H:)
    mnivpqdtfksqvstdqdksvlssavpslpdtlrqqeggavplstqlndrhplestlknw
    ettqrqrqmeqyrqifgiaepmkrtmemeivnrtdfnplstngsihrdillnkecsidwe
    dvypgtglqastmvgddvhskiekqlgi
    

    Sequence, based on observed residues (ATOM records):
    >7lsxH (H:)
    ndrhplestlknwettqrqrqmeqyrqifgiaepmkrtmemeivnrtdfnplstngsihr
    dillnkecsidwedvypgddvhskiekqlgi
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7lsxI (I:)
    maglsfdnyqrnnflaenshtqpkatstgttivgvkfnngvviaadtrstqgpivadknc
    aklhrispkiwcagagtaadteavtqligsnielhslytsreprvvsalqmlkqhlfkyq
    ghigaylivagvdptgshlfsihahgstdvgyylslgsgslaamavleshwkqdltkeea
    iklasdaiqagiwndlgsgsnvdvcvmeigkdaeylrnyltpnvreekqksykfprgtta
    vlkesivnicdiqeeqvdita
    

    Sequence, based on observed residues (ATOM records):
    >7lsxI (I:)
    aglsfdnyqrnnflaenshtqpkatstgttivgvkfnngvviaadklhrispkiwcagag
    taadteavtqligsnielhslytsreprvvsalqmlkqhlfkyqghigaylivagvdptg
    shlfsihahgstdvgyylslgsgslaamavleshwkqdltkeeaiklasdaiqagnvdvc
    vmeigkdaeylrnylttavlkesivni
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >7lsxJ (J:)
    msdpssinggivvamtgkdcvaiacdlrlgsqslgvsnkfekifhyghvflgitglatdv
    ttlnemfryktnlyklkeeraiepetftqlvssslyerrfgpyfvgpvvaginsksgkpf
    iagfdligcideakdfivsgtasdqlfgmceslyepnlepedlfetisqallnaadrdal
    sgwgavvyiikkdevvkrylkmrqd
    

    Sequence, based on observed residues (ATOM records):
    >7lsxJ (J:)
    ssinggivvamtgkdcvaiacdlfekifhyghvflgitglatdvttlnemfryktnlykl
    keeraiepetftqlvssslyerrfgpyfvgpvvaginsksgkpfiagfdligcideakdf
    ivsgtasdqlfgmceslyepnlepedlfetisqallnawgavvyiikkdevvkryl
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >7lsxK (K:)
    mdiilgirvqdsvilasskavtrgisvlkdsddktrqlsphtlmsfageagdtvqfaeyi
    qaniqlysiredyelspqavssfvrqelaksirsrrpyqvnvliggydkkknkpelyqid
    ylgtkvelpygahgysgfytfslldhhyrpdmtteegldllklcvqelekrmpmdfkgvi
    vkivdkdgirqvddfqaq
    

    Sequence, based on observed residues (ATOM records):
    >7lsxK (K:)
    mdiilgirvqdsvilasskdktrqlsphtlmsfageagdtvqfaeyiqaniqlysiredy
    elspqavssfvrqelaksirsrrpyqvnvliggydkkknkpelyqidylgtkvelpygah
    gysgfytfslldhhyrpdmtteegldllklcvqelekrmpmdfkgvivkivdkdgirqvd
    df
    

  • Chain 'O':
    Sequence, based on SEQRES records:
    >7lsxO (O:)
    mlfkqwndlpepkhlldlpeisknlqslevcpvpkvefpqdldvpqystavittkimnpl
    fpknllqltsigeikttltvkspslpqssgkhswnydenfpnevdpdqkndtadetvygf
    sfpiysfgktllfsmeenfisispifgnmisrsiisqlaqfspdiivigtsdkiasmkvm
    tenectlqppefitgfigsvltqlivgpskglkfkclvapsegpngfeklslsdmgslvd
    lcgqwlgfepsryseecyrlwrcdsaaigaqsglyi
    

    Sequence, based on observed residues (ATOM records):
    >7lsxO (O:)
    mlfkqwndlpepkhlldlpeisknlqslevcpvpkvefpqdldvpqystavittkimnpl
    fpknllqltsigeikttltvvygfsfpiysfgktllfsmeenfisispifgnmisrsiis
    qlaqfspdiivigtsdkiasmkvmtenectlqppefitgfigsvltqlivgpskglkfkc
    lvapsegpngfeklslsdmgslvdlcgqwlgfepsryseecyrlwrcdsaaigaqsglyi
    

  • Chain 'P':
    Sequence, based on SEQRES records:
    >7lsxP (P:)
    msclvlplvsvgnipqlsidwllnsqaneweylealdskylvefvgpldrpedgsdslyk
    dadmkyssalevfynkkrglfaiqqrtplvsvnylnnfiveiilpflskyniseiciwds
    lyamedengvivrpqevyslgefyfddeaellsnlhlndqesmvnnwlhftptsfqdkis
    vdqpifkilfqilnasqrpkalrsikycsclanegdnsldsqqflqwiisqkviknappi
    vkfvrpiswqgaygmadardkfvdlyn
    

    Sequence, based on observed residues (ATOM records):
    >7lsxP (P:)
    sclvlplvsvgnipqlsidwllnsqaneweylealdskylvefvgpldrpedgsdslykd
    admkyssalevfynkkrglfaiqqrtplvsvnylnnfiveiilpflskyniseiciwdsl
    yamedengvivrpqevyslgefyfddeaellsnlhlndqesmvnnwlhftptsfqdkisv
    dqpifkilfqillrsikycsclanegdnsldsqqflqwiisqkviknappivkfvrpisw
    qgaygmadardkf