PDB entry 7lqy

View 7lqy on RCSB PDB site
Description: structure of squirrel trpv1 in apo state
Deposited on 2021-02-15, released 2021-04-21
The last revision was dated 2021-04-28, with a file datestamp of 2021-04-23.
Experiment type: EM
Resolution: 3.19 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Osm-9-like TRP channel 1
    Species: Ictidomys tridecemlineatus [TaxId:43179]
    Gene: TRPV1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Osm-9-like TRP channel 1
    Species: Ictidomys tridecemlineatus [TaxId:43179]
    Gene: TRPV1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Osm-9-like TRP channel 1
    Species: Ictidomys tridecemlineatus [TaxId:43179]
    Gene: TRPV1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Osm-9-like TRP channel 1
    Species: Ictidomys tridecemlineatus [TaxId:43179]
    Gene: TRPV1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: POV, YBG, CL, NA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7lqyA (A:)
mkkwanldsgesedpphedscpdppdgdpnskqspakphifsttksrtrlfgkgdseeas
pmdcsyeegelascptitvssvviiqrpgdaltcarqlsqdsvsagaekplklydrrsif
davaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhngqndtisllld
iarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvqaaangdffkk
tkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvlhalvevadnt
adntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigvlayilqreiq
epecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpnrhdmllvepl
nrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklkntvgdyfrvtge
ilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvvlyfshrkeyv
asmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvflfgfstavvtl
iedgknysepaeytshrwrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfslr
sgrvsgrnwrnfalvpllrdastrdrhhaqpeevhlkhfagslkpedaevfkdsmapgek
lpvr

    Sequence, based on observed residues (ATOM records):
    >7lqyA (A:)
lklydrrsifdavaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhng
qndtisllldiarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvq
aaangdffkktkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvl
halvevadntadntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigv
layilqreiqepecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpn
rhdmllveplnrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklknt
vgdyfrvtgeilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvv
lyfshrkeyvasmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvfl
fgfstavvtliedgknywrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfsl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7lqyB (B:)
mkkwanldsgesedpphedscpdppdgdpnskqspakphifsttksrtrlfgkgdseeas
pmdcsyeegelascptitvssvviiqrpgdaltcarqlsqdsvsagaekplklydrrsif
davaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhngqndtisllld
iarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvqaaangdffkk
tkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvlhalvevadnt
adntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigvlayilqreiq
epecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpnrhdmllvepl
nrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklkntvgdyfrvtge
ilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvvlyfshrkeyv
asmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvflfgfstavvtl
iedgknysepaeytshrwrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfslr
sgrvsgrnwrnfalvpllrdastrdrhhaqpeevhlkhfagslkpedaevfkdsmapgek
lpvr

    Sequence, based on observed residues (ATOM records):
    >7lqyB (B:)
lklydrrsifdavaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhng
qndtisllldiarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvq
aaangdffkktkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvl
halvevadntadntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigv
layilqreiqepecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpn
rhdmllveplnrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklknt
vgdyfrvtgeilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvv
lyfshrkeyvasmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvfl
fgfstavvtliedgknywrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfsl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7lqyC (C:)
mkkwanldsgesedpphedscpdppdgdpnskqspakphifsttksrtrlfgkgdseeas
pmdcsyeegelascptitvssvviiqrpgdaltcarqlsqdsvsagaekplklydrrsif
davaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhngqndtisllld
iarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvqaaangdffkk
tkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvlhalvevadnt
adntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigvlayilqreiq
epecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpnrhdmllvepl
nrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklkntvgdyfrvtge
ilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvvlyfshrkeyv
asmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvflfgfstavvtl
iedgknysepaeytshrwrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfslr
sgrvsgrnwrnfalvpllrdastrdrhhaqpeevhlkhfagslkpedaevfkdsmapgek
lpvr

    Sequence, based on observed residues (ATOM records):
    >7lqyC (C:)
lklydrrsifdavaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhng
qndtisllldiarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvq
aaangdffkktkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvl
halvevadntadntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigv
layilqreiqepecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpn
rhdmllveplnrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklknt
vgdyfrvtgeilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvv
lyfshrkeyvasmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvfl
fgfstavvtliedgknywrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfsl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7lqyD (D:)
mkkwanldsgesedpphedscpdppdgdpnskqspakphifsttksrtrlfgkgdseeas
pmdcsyeegelascptitvssvviiqrpgdaltcarqlsqdsvsagaekplklydrrsif
davaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhngqndtisllld
iarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvqaaangdffkk
tkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvlhalvevadnt
adntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigvlayilqreiq
epecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpnrhdmllvepl
nrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklkntvgdyfrvtge
ilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvvlyfshrkeyv
asmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvflfgfstavvtl
iedgknysepaeytshrwrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfslr
sgrvsgrnwrnfalvpllrdastrdrhhaqpeevhlkhfagslkpedaevfkdsmapgek
lpvr

    Sequence, based on observed residues (ATOM records):
    >7lqyD (D:)
lklydrrsifdavaqnncqelesllpflqksrkrltdsefkdpetgktcllkamlnlhng
qndtisllldiarqtdslkefvnasytdsyykgqtalhiaierrnmalvtllvengadvq
aaangdffkktkgrpgfyfgelplslaactnqlaivkfllqnswqpadisardsvgntvl
halvevadntadntkfvtsmyneililgaklhptlkleelinkkgltplalaassgkigv
layilqreiqepecrhlsrkftewaygpvhsslydlscidtceknsvleviaysssetpn
rhdmllveplnrllqdkwdrfvkrifyfnffvyclymivfttaayyrpvdglppyklknt
vgdyfrvtgeilsvsggvyfflrgiqyflqrrpsmktlfvdsysemlffvqslfmlgsvv
lyfshrkeyvasmvfslamgwtnmlyytrgfqqmgiyavmiekmilrdlcrfmfvylvfl
fgfstavvtliedgknywrapgcrppdsynslystclelfkftigmgdleftenydfkav
fiilllayviltyilllnmlialmgetvnkiaqeskniwklqraitildteksflkcmrk
afrsgkllqvgytpdgkddyrwcfrvdevnwttwntnvgiinedpgncegvkrtlsfsl