PDB entry 7loy

View 7loy on RCSB PDB site
Description: Dihydrodipicolinate synthase with pyruvate from Candidatus Liberibacter solanacearum
Class: lyase
Keywords: LYASE, TIM Barrel
Deposited on 2021-02-11, released 2021-03-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-03, with a file datestamp of 2021-02-26.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7loya_
  • Chain 'B':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7loyb_
  • Chain 'C':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7loyc_
  • Chain 'D':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7loyd_
  • Chain 'E':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7loye_
  • Chain 'F':
    Compound: 4-hydroxy-tetrahydrodipicolinate synthase
    Species: Candidatus Liberibacter solanacearum [TaxId:556287]
    Gene: dapA, DJ66_0589
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7loyf_
  • Heterogens: KPI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7loyA (A:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcaghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >7loyA (A:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglca

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7loyB (B:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcaghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >7loyB (B:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglca

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7loyC (C:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcaghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >7loyC (C:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglca

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7loyD (D:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcaghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >7loyD (D:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglca

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7loyE (E:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcaghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >7loyE (E:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglca

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7loyF (F:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglcaghhhh
hh

    Sequence, based on observed residues (ATOM records): (download) 
    >7loyF (F:)
mfqrsipalitpftkdnlidedsfvdhiewqisegssglvpagttgesstlsyeehcrvv
elcvktaagrvpvmagagsnntkesielaqyaqntgadallvvvpyynkpnkkgllahfg
sianavslpiyiynnpsrtviemdvdtmaelvktysnivgvxdatgrielasgqriacgs
dfiqlsgddssalgfnvhggvgcisvtanvapricaefqkaisegdyrqaleyqdklfpl
hqalfiepsissvkyalsrlgrnvslvvrapmvsileketmfaidqaldhiglca