PDB entry 7lmk

View 7lmk on RCSB PDB site
Description: crystal structure of bovine dnmt1 bah1 domain in complex with h4k20me3
Deposited on 2021-02-05, released 2021-02-17
The last revision was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (cytosine-5)-methyltransferase 1
    Species: Bos taurus [TaxId:9913]
    Gene: DNMT1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q24K09 (1-113)
      • expression tag (0)
      • linker (114-118)
    • Uniprot Q24K09 (119-157)
  • Chain 'B':
    Compound: DNA (cytosine-5)-methyltransferase 1
    Species: Bos taurus [TaxId:9913]
    Gene: DNMT1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q24K09 (Start-113)
      • linker (114-118)
    • Uniprot Q24K09 (119-157)
  • Chain 'C':
    Compound: DNA (cytosine-5)-methyltransferase 1
    Species: Bos taurus [TaxId:9913]
    Gene: DNMT1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q24K09 (Start-113)
      • linker (114-118)
    • Uniprot Q24K09 (119-157)
  • Chain 'D':
    Compound: DNA (cytosine-5)-methyltransferase 1
    Species: Bos taurus [TaxId:9913]
    Gene: DNMT1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q24K09 (Start-113)
      • linker (114-118)
    • Uniprot Q24K09 (119-157)
  • Chain 'F':
    Compound: histone h4
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h4
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: histone h4
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: histone h4
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: M3L, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >7lmkA (A:)
sknriswvgdavktdgkksyykkvcidsetlevgdcvsvipddsskplylarvtalweds
sngqmfhahwfcagtdtvlgatsdplelflvdecedmqlsyihskvqviykapsgagsat
yfyqlwydqdyarfesppktqptednkykfcascarla

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7lmkB (B:)
sknriswvgdavktdgkksyykkvcidsetlevgdcvsvipddsskplylarvtalweds
sngqmfhahwfcagtdtvlgatsdplelflvdecedmqlsyihskvqviykapsgagsat
yfyqlwydqdyarfesppktqptednkykfcascarla

    Sequence, based on observed residues (ATOM records):
    >7lmkB (B:)
nriswvgdavktdgkksyykkvcidsetlevgdcvsvipddsskplylarvtalwedssn
gqmfhahwfcagtdtvlgatsdplelflvdecedmqlsyihskvqviykapsgagsatyf
yqlwydqdyarfesppktqptednkykfcascarla

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7lmkC (C:)
sknriswvgdavktdgkksyykkvcidsetlevgdcvsvipddsskplylarvtalweds
sngqmfhahwfcagtdtvlgatsdplelflvdecedmqlsyihskvqviykapsgagsat
yfyqlwydqdyarfesppktqptednkykfcascarla

    Sequence, based on observed residues (ATOM records):
    >7lmkC (C:)
nriswvgdavktdgkksyykkvcidsetlevgdcvsvipddsskplylarvtalwedssn
gqmfhahwfcagtdtvlgatsdplelflvdecedmqlsyihskvqviykapsgagsatyf
yqlwydqdyarfesppktqptednkykfcascarla

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7lmkD (D:)
sknriswvgdavktdgkksyykkvcidsetlevgdcvsvipddsskplylarvtalweds
sngqmfhahwfcagtdtvlgatsdplelflvdecedmqlsyihskvqviykapsgagsat
yfyqlwydqdyarfesppktqptednkykfcascarla

    Sequence, based on observed residues (ATOM records):
    >7lmkD (D:)
riswvgdavktdgkksyykkvcidsetlevgdcvsvipddsskplylarvtalwedssng
qmfhahwfcagtdtvlgatsdplelflvdecedmqlsyihskvqviykapsgagsatyfy
qlwydqdyarfesppktqptednkykfcascarla

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7lmkF (F:)
gakrhrkvlrdny

    Sequence, based on observed residues (ATOM records):
    >7lmkF (F:)
hrkvlrd

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7lmkG (G:)
gakrhrkvlrdny

    Sequence, based on observed residues (ATOM records):
    >7lmkG (G:)
rhrkvlrd

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7lmkH (H:)
gakrhrkvlrdny

    Sequence, based on observed residues (ATOM records):
    >7lmkH (H:)
rhrkvlrdn

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7lmkI (I:)
gakrhrkvlrdny

    Sequence, based on observed residues (ATOM records):
    >7lmkI (I:)
rhrkvlrd