PDB entry 7la1

View 7la1 on RCSB PDB site
Description: Crystal structure of phosphoglycerate kinase from Mycobacterium avium
Class: transferase
Keywords: SSGCID, phosphoglycerate kinase, dimer, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on 2021-01-05, released 2021-03-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-03, with a file datestamp of 2021-02-26.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: phosphoglycerate kinase
    Species: Mycobacterium avium (strain 104) [TaxId:243243]
    Gene: pgk, MAV_3340
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QHY4 (2-End)
      • initiating methionine (0)
      • expression tag (1)
    Domains in SCOPe 2.08: d7la1a_
  • Chain 'B':
    Compound: phosphoglycerate kinase
    Species: Mycobacterium avium (strain 104) [TaxId:243243]
    Gene: pgk, MAV_3340
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QHY4 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d7la1b1, d7la1b2
  • Chain 'C':
    Compound: phosphoglycerate kinase
    Species: Mycobacterium avium (strain 104) [TaxId:243243]
    Gene: pgk, MAV_3340
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QHY4 (2-End)
      • initiating methionine (0)
      • expression tag (1)
    Domains in SCOPe 2.08: d7la1c_
  • Chain 'D':
    Compound: phosphoglycerate kinase
    Species: Mycobacterium avium (strain 104) [TaxId:243243]
    Gene: pgk, MAV_3340
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7la1d_
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7la1A (A:)
mvavhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveaga
kvvvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvl
llenirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllph
yagtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftf
laaqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipd
dlmgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafs
vvgggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqptggaaghhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7la1A (A:)
mvavhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveaga
kvvvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvl
llenirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllph
yagtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftf
laaqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipd
dlmgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafs
vvgggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqpt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7la1B (B:)
mvavhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveaga
kvvvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvl
llenirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllph
yagtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftf
laaqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipd
dlmgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafs
vvgggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqptggaaghhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7la1B (B:)
vavhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveagak
vvvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvll
lenirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllphy
agtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftfl
aaqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipdd
lmgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafsv
vgggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqpt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7la1C (C:)
mvavhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveaga
kvvvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvl
llenirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllph
yagtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftf
laaqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipd
dlmgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafs
vvgggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqptggaaghhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7la1C (C:)
mvavhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveaga
kvvvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvl
llenirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllph
yagtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftf
laaqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipd
dlmgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafs
vvgggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqpt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7la1D (D:)
mvavhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveaga
kvvvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvl
llenirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllph
yagtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftf
laaqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipd
dlmgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafs
vvgggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqptggaaghhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >7la1D (D:)
avhnlkdllaegvsgrgvlvrsdlnvpldsdgeqgritdpgritasvptlsalveagakv
vvaahlgrpkngpdpalslapvaaalgeqlgrhvqlasdvvgtdalaraegltdgdvlll
enirfdaretskddaerlalarqlaelvgptgafvsdgfgvvhrkqasvydvatllphya
gtlvaeeiavleqltgstkrpyavvlggskvsdklgvieslatkadsivigggmcftfla
aqgfsvgkslletemvdtcrrlldtyvdvlrlpvdivaadrfaadaapqtvpadaipddl
mgldigpgsvkrftallsnaetifwngpmgvfefpafaagtkglaeaiaaatgkgafsvv
gggdsaaavralgipesgfshistgggasleylegkalpgievlgrpqp