PDB entry 7l5j

View 7l5j on RCSB PDB site
Description: mouse norovirus protruding domain complexed with neutralizing fab fragment from mab a6.2
Deposited on 2020-12-22, released 2021-04-07
The last revision was dated 2021-06-23, with a file datestamp of 2021-06-18.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Anti mouse norovirus mAb A6.2 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7L5J (0-End)
  • Chain 'W':
    Compound: Anti mouse norovirus mAb A6.2 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7L5J (Start-220)
  • Chain 'X':
    Compound: Anti mouse norovirus mAb A6.2 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7L5J (0-End)
  • Chain 'Y':
    Compound: Anti mouse norovirus mAb A6.2 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7L5J (Start-220)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7l5jA (A:)
snatiyrmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpi
sgswvscfaaeaayefqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqt
ettktgdklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygf
qdtipeyndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswf
asnaftvqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswv
prlyqlasvgslatgrmlkq

    Sequence, based on observed residues (ATOM records):
    >7l5jA (A:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaayefqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asvgs

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7l5jB (B:)
snatiyrmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpi
sgswvscfaaeaayefqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqt
ettktgdklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygf
qdtipeyndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswf
asnaftvqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswv
prlyqlasvgslatgrmlkq

    Sequence, based on observed residues (ATOM records):
    >7l5jB (B:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaayefqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asvg

  • Chain 'L':
    Sequence, based on SEQRES records:
    >7l5jL (L:)
qivltqspaimsaspgekvtitcsasssvsymhwfqqkpgtspklwiystsnlasgvpar
fsgsgsgtsysltisrmeaedaatyycqqrssypftfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrn

    Sequence, based on observed residues (ATOM records):
    >7l5jL (L:)
qivltqspaimsaspgekvtitcsasssvsymhwfqqkpgtspklwiystsnlasgvpar
fsgsgsgtsysltisrmeaedaatyycqqrssypftfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnr

  • Chain 'W':
    Sequence, based on SEQRES records:
    >7l5jW (W:)
evkllesggglvqpggslklscaasgfdfsrywmswvrqapgkglewigqinphsstiny
tpslrdkfiisrdnakntlylqmtkvrsedtalyycarllryfyaldywgqgasvtvssa
kttppsvyplapgraaaaasmvtlgclvkgyfpepvtvtwnsgslaagvhtfpavlqaal
ytlsssvtvpssswpsetvtcnvahpasstkvdkkivpraa

    Sequence, based on observed residues (ATOM records):
    >7l5jW (W:)
vkllesggglvqpggslklscaasgfdfsrywmswvrqapgkglewigqinphsstinyt
pslrdkfiisrdnakntlylqmtkvrsedtalyycarllryfyaldywgqgasvtvssak
ttppsvyplapgraaaaasmvtlgclvkgyfpepvtvtwnsgslaagvhtfpavlqaaly
tlsssvtvpssswpsetvtcnvahpasstkvdkkivpraa

  • Chain 'X':
    Sequence, based on SEQRES records:
    >7l5jX (X:)
qivltqspaimsaspgekvtitcsasssvsymhwfqqkpgtspklwiystsnlasgvpar
fsgsgsgtsysltisrmeaedaatyycqqrssypftfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrn

    Sequence, based on observed residues (ATOM records):
    >7l5jX (X:)
qivltqspaimsaspgekvtitcsasssvsymhwfqqkpgtspklwiystsnlasgvpar
fsgsgsgtsysltisrmeaedaatyycqqrssypftfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnr

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >7l5jY (Y:)
evkllesggglvqpggslklscaasgfdfsrywmswvrqapgkglewigqinphsstiny
tpslrdkfiisrdnakntlylqmtkvrsedtalyycarllryfyaldywgqgasvtvssa
kttppsvyplapgraaaaasmvtlgclvkgyfpepvtvtwnsgslaagvhtfpavlqaal
ytlsssvtvpssswpsetvtcnvahpasstkvdkkivpraa

    Sequence, based on observed residues (ATOM records):
    >7l5jY (Y:)
vkllesggglvqpggslklscaasgfdfsrywmswvrqapgkglewigqinphsstinyt
pslrdkfiisrdnakntlylqmtkvrsedtalyycarllryfyaldywgqgasvtvssak
ttppsvyplapgraaaaasmvtlgclvkgyfpepvtvtwnsgslaagvhtfpavlqaaly
tlsssvtvpssswpsetvtcnvahpasstkvdkkivpraa