PDB entry 7kzf

View 7kzf on RCSB PDB site
Description: High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility
Class: virus
Keywords: HPV16, quasivirus, L1, capsomer, subparticle, VIRUS
Deposited on 2020-12-10, released 2021-02-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-24, with a file datestamp of 2021-02-19.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 16 [TaxId:333760]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7kzfa_
  • Chain 'B':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 16 [TaxId:333760]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7kzfb_
  • Chain 'C':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 16 [TaxId:333760]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7kzfc_
  • Chain 'D':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 16 [TaxId:333760]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7kzfd_
  • Chain 'E':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 16 [TaxId:333760]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7kzfe_
  • Chain 'F':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 16 [TaxId:333760]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7kzff_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7kzfA (A:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf
tlgkrkatpttsststtakrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >7kzfA (A:)
ylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnkilvpkvsglqyr
vfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisghpllnklddten
asayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvavnpgdcppleli
ntviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvsepygdslffylr
reqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmvtsdaqifnkpy
wlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnfkeylrhgeeyd
lqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrfvtsqaiacqkh
tppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkftlgkr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7kzfB (B:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf
tlgkrkatpttsststtakrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >7kzfB (B:)
vpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnkilvpkvsglqyrvfri
hlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisghpllnklddtenasay
aanagvdnrecismdykqtqlcligckppigehwgkgspctnvavnpgdcpplelintvi
qdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvsepygdslffylrreqm
fvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmvtsdaqifnkpywlqr
aqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnfkeylrhgeeydlqfi
fqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrfvtsqaiacqkhtppa
pkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkft

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7kzfC (C:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf
tlgkrkatpttsststtakrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >7kzfC (C:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7kzfD (D:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf
tlgkrkatpttsststtakrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >7kzfD (D:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7kzfE (E:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf
tlgkrkatpttsststtakrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >7kzfE (E:)
lwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnkilv
pkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisghpl
lnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvavnp
gdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvsepy
gdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmvts
daqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnfke
ylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrfvt
sqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkftl
g

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7kzfF (F:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf
tlgkrkatpttsststtakrkkr

    Sequence, based on observed residues (ATOM records): (download) 
    >7kzfF (F:)
mslwlpseatvylppvpvskvvstdeyvartniyyhagtsrllavghpyfpikkpnnnki
lvpkvsglqyrvfrihlpdpnkfgfpdtsfynpdtqrlvwacvgvevgrgqplgvgisgh
pllnklddtenasayaanagvdnrecismdykqtqlcligckppigehwgkgspctnvav
npgdcpplelintviqdgdmvdtgfgamdfttlqanksevpldictsickypdyikmvse
pygdslffylrreqmfvrhlfnragavgenvpddlyikgsgstanlassnyfptpsgsmv
tsdaqifnkpywlqraqghnngicwgnqlfvtvvdttrstnmslcaaistsettykntnf
keylrhgeeydlqfifqlckitltadvmtyihsmnstiledwnfglqpppggtledtyrf
vtsqaiacqkhtppapkedplkkytfwevnlkekfsadldqfplgrkfllqaglkakpkf
tlg