PDB entry 7kzd

View 7kzd on RCSB PDB site
Description: crystal structure of kaba from bacillus cereus uw85 in complex with the reduced internal aldimine and with bound glutarate
Deposited on 2020-12-10, released 2021-05-26
The last revision was dated 2021-06-02, with a file datestamp of 2021-05-28.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
    Species: Bacillus cereus [TaxId:1396]
    Gene: kabA, GE376_30835
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GUA, PLR, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kzdA (A:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdA (A:)
lttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdifn
ysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkky
viatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksycid
plkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygdi
iilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidnl
qaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriing
rrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhpn
mlleeqnfvleglinvnk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kzdB (B:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdB (B:)
tlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdif
nysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkk
yviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksyci
dplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygd
iiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidn
lqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriin
grrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhp
nmlleeqnfvleglinvnk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7kzdC (C:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdC (C:)
lttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdifn
ysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkky
viatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksycid
plkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygdi
iilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidnl
qaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriing
rrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhpn
mlleeqnfvleglinvnk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7kzdD (D:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdD (D:)
lttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdifn
ysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkky
viatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksycid
plkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygdi
iilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidnl
qaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriing
rrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhpn
mlleeqnfvleglinvnk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7kzdE (E:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdE (E:)
ttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdifny
srkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkkyv
iatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksycidp
lkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygdii
ilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidnlq
aaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriingr
rdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhpnm
lleeqnfvleglinvnk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7kzdF (F:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdF (F:)
ttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdifny
srkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkkyv
iatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksycidp
lkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygdii
ilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidnlq
aaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriingr
rdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhpnm
lleeqnfvleglinvnk

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7kzdG (G:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdG (G:)
tlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdif
nysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkk
yviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksyci
dplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygd
iiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidn
lqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriin
grrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhp
nmlleeqnfvleglinvnk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7kzdH (H:)
gamdmktlttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkidid
iekdifnysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevig
dylnkkyviatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdid
hksycidplkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssn
lgeygdiiilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgf
nskidnlqaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlf
piriingrrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeil
hlplhpnmlleeqnfvleglinvnk

    Sequence, based on observed residues (ATOM records):
    >7kzdH (H:)
lttisghskdnlallkclqgetkekefeisnvlpnhkmkeklfrenklkididiekdifn
ysrkniqkiefmpvnrlisqseidgiigtlkevlptgqftsgpfskkleevigdylnkky
viatssgtdalmvsllsigiqpgdevimpansfaatenavlaigakpvfvdidhksycid
plkieeaitqktkcilpvhlygkqcdmkrireiadvyqlriiedacqaigssnlgeygdi
iilsfnpyknfgvcgkagaivtnnenlaircnqysyhgfevdkknkkvldfgfnskidnl
qaaiglerikflsynnlkrvflaqryirnlkeledreliklprmtednvwhlfpiriing
rrdevknklyqlynietdiyypvlshkhntklvkknymqdtllnteqvhkeilhlplhpn
mlleeqnfvleglinvnk