PDB entry 7ky5

View 7ky5 on RCSB PDB site
Description: structure of the s. cerevisiae phosphatidylcholine flippase dnf2-lem3 complex in the e2p transition state
Deposited on 2020-12-07, released 2021-01-06
The last revision was dated 2021-01-06, with a file datestamp of 2021-01-01.
Experiment type: EM
Resolution: 3.98 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phospholipid-transporting ATPase DNF2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: DNF2, YDR093W, YD8557.01
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Alkylphosphocholine resistance protein LEM3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: LEM3, BRE3, ROS3, YNL323W, N0333
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CLR, ALF, MG, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7ky5A (A:)
    msspskptspfvddiehesgsasnglssmspfddsfqfekpssahgnievaktggsvlkr
    qskpmkdistpdlskvtfdgiddysndndindddelngkkteihehenevdddlhsfqat
    pmpntggfedveldnnegsnndsqadhklkrvrfgtrrnksgridinrsktlkwakknfh
    naidefstkedslensalqnrsdelrtvyynlplpedmldedglplavyprnkirttkyt
    pltffpknilfqfhnfaniyflillilgafqifgvtnpgfasvpliviviitaikdgied
    srrtvldlevnntrthilsgvknenvavdnvslwrrfkkantralikifeyfsenltaag
    rekklqkkreelrrkrnsrsfgprgsldsigsyrmsadfgrpsldyenlnqtmsqanryn
    dgenlvdrtlqpnpecrfakdywknvkvgdivrvhnndeipadmillstsdvdgacyvet
    knldgetnlkvrqslkcskiikssrditrtkfwvesegphanlysyqgnfkwqdtqngni
    rnepvninnlllrgctlrntkwamgmviftgddtkiminagvtptkksrisrelnfsvil
    nfvllfilcftagivngvyykqkprsrdyfefgtiggsastngfvsfwvavilyqslvpi
    slyisveiiktaqaifiytdvllynakldypctpkswnisddlgqieyifsdktgtltqn
    vmefkkctingvsygraytealaglrkrqgvdvesegrrekeeiakdretmidelrsmsd
    ntqfcpedltfvskeivedlkgssgdhqqkccehfllalalchsvlvepnkddpkkldik
    aqspdesalvstarqlgysfvgssksgliveiqgvqkefqvlnvlefnssrkrmsciiki
    pgstpkdepkallickgadsviysrldrtqndatllektalhleeyateglrtlclaqre
    ltwseyerwvktydvaaasvtnreeeldkvtdvierelillggtaiedrlqdgvpdsial
    laeagiklwvltgdkvetainigfscnvlnndmellvvkasgedveefgsdpiqvvnnlv
    tkylrekfgmsgseeelkeakrehglpqgnfaviidgdalkvalngeemrrkflllcknc
    kavlccrvspaqkaavvklvkktldvmtlaigdgsndvamiqsadvgvgiageegrqavm
    csdyaigqfryvtrlvlvhgkwcykrlaemipqffyknviftlslfwygiynnfdgsylf
    eytyltfynlaftsvpvillavldqdvsdtvsmlvpqlyrvgilrkewnqtkflwymldg
    vyqsvicfffpylayhknmvvtenglgldhryfvgvfvtaiavtscnfyvfmeqyrwdwf
    cglficlslavfygwtgiwtsssssnefykgaarvfaqpaywavlfvgvlfcllprftid
    cirkifypkdieivremwlrgdfdlypqgydptdpsrprineirpltdfkepisldthfd
    gvshsqetivteeipmsilngeqgsrkgyrvsttlerrdqlspvtttnnlprrsmasarg
    nklrtsldrtreemlanhqldtrysverarasldlpginhaetllsqrsrdr
    

    Sequence, based on observed residues (ATOM records):
    >7ky5A (A:)
    nrsdelrtvyynlplpedmldedglplavyprnkirttkytpltffpknilfqfhnfani
    yflillilgafqifgvtnpgfasvpliviviitaikdgiedsrrtvldlevnntrthils
    gvknenvanlvdrtlqpnpecrfakdywknvkvgdivrvhnndeipadmillstsdvdga
    cyvetknldgetnlkvrqslkcskiikssrditrtkfwvesegphanlysyqgnfkwqdt
    qngnirnepvninnlllrgctlrntkwamgmviftgddtkiminagvtptkksrisreln
    fsvilnfvllfilcftagivngvyykqkprsrdstngfvsfwvavilyqslvpislyisv
    eiiktaqaifiytdvllynakldypctpkswnisddlgqieyifsdktgtltqnvmefkk
    ctingvsygraytealaglrvdvesegrrekeeiakdretmidelrsmsdntqfcpedlt
    fvskeivedlkgssgdhqqkccehfllalalchsvlvepnkddpkkldikaqspdesalv
    starqlgysfvgssksgliveiqgvqkefqvlnvlefnssrkrmsciikipgepkallic
    kgadsviysrldrtqndatllektalhleeyateglrtlclaqreltwseyerwvktydv
    aaasvtnreeeldkvtdvierelillggtaiedrlqdgvpdsiallaeagiklwvltgdk
    vetainigfscnvlnndmellvvkasgedveefgsdpiqvvnnlvtkylrekfgmsgsee
    elkeakrehglpqgnfaviidgdalkvalngeemrrkflllcknckavlccrvspaqkaa
    vvklvkktldvmtlaigdgsndvamiqsadvgvgiageegrqavmcsdyaigqfryvtrl
    vlvhgkwcykrlaemipqffyknviftlslfwygiynnfdgsylfeytyltfynlaftsv
    pvillavldqdvsdtvsmlvpqlyrvgilrkewnqtkflwymldgvyqsvicfffpylay
    hknmvvtenglgldhryfvgvfvtaiavtscnfyvfmeqyrwdwfcglficlslavfygw
    tgiwtsssssnefykgaarvfaqpaywavlfvgvlfcllprftidcirkifypkdieivr
    emwlrgdfdlypqgydptdpsrpri
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7ky5B (B:)
    mvnfdlgqvgevfrrkdkgaivsgdnpeeeedvdasefeedevkpvrtknrrpkedaftq
    qrlaainpvltprtvlplylliavvfvivggcilaqnskvdevtiyyqdcmtnatsswsd
    ipsehwqfvfhkyktyntapqwrfvddesddftkqrgtcqirfttpsdmknnvylnyvle
    kfaanhrryvlsfsedqirgedasyetvhdatginckplsknadgkiyypcgliansmfn
    dtfplqltnvgdtsnnysltnkginwesdkkrykktkynytqiapppywekmypdgynet
    nipdiqdweefqnwmrpgafdkitklirinkndtlpageyqldiglhwpvlefngkkgiy
    lthgshlggrnpflgivyliggcicaamalilltfwlfggrkiadasslswnmk
    

    Sequence, based on observed residues (ATOM records):
    >7ky5B (B:)
    devknrrpkedaftqqrlaainpvltprtvlplylliavvfvivggcilaqnskvdevti
    yyqdcmtnatsswsdipsehwqfvfhkyktyntapqwrfvddesddftkqrgtcqirftt
    psdmknnvylnyvlekfaanhrryvlsfsedqirgedasyetvhdatginckplsknadg
    kiyypcgliansmfndtfplqltnvgdtsnnysltnkginwesdkkrykktkynytqiap
    ppywekmypdgynetnipdiqdweefqnwmrpgafdkitklirinkndtlpageyqldig
    lhwpvlefngkkgiylthgshlggrnpflgivyliggcicaamalilltfwlfggrkiad
    asslswnmk