SCOPe 2.08: Structural Classification of Proteins

PDB entry 7krs

View 7krs on RCSB PDB site
Description: structural impact on sars-cov-2 spike protein by d614g substitution
Deposited on 2020-11-20, released 2021-03-24
The last revision was dated 2021-05-12, with a file datestamp of 2021-05-07.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - engineered mutation (613)
Chain 'B':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - engineered mutation (613)
Chain 'C':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - engineered mutation (613)
Heterogens: FUC, MAN, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>7krsA (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqgvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytlesgggsawshpqfekgggsgggsggssawshpqfek

Sequence, based on observed residues (ATOM records):

>7krsA (A:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihkrfd
npvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpf
lgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgy
fkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalsssgwtagaaayyvgy
lqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrf
pnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklnd
lcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggny
nylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyr
vvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdi
adttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevpvaystgsn
vfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysnnsia
iptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiave
qdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagf
ikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaa
lqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvn
qnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqli
raaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqek
nfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigiv
nntvydplqpeldsfkeeldkyfknhtsp

Chain 'B':
Sequence, based on SEQRES records:

>7krsB (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqgvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytlesgggsawshpqfekgggsgggsggssawshpqfek

Sequence, based on observed residues (ATOM records):

>7krsB (B:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaikrfdn
pvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpfl
gvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgyf
kiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalsssgwtagaaayyvgyl
qprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfp
nitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndl
cftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnyn
ylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrv
vvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdia
dttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevpvaitwrvys
tgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaensvaysn
nsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltg
iaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtla
dagfikcaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmay
rfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvk
qlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeirasanl
aatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichd
gkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpe
ldsfkeeldkyfknhtsp

Chain 'C':
Sequence, based on SEQRES records:

>7krsC (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqgvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpwyiwlgfiagliaivmvtimlccmtsccsclkgccscgscckfdedd
sepvlkgvklhytlesgggsawshpqfekgggsgggsggssawshpqfek

Sequence, based on observed residues (ATOM records):

>7krsC (C:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihkrfd
npvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpf
lgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidgy
fkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalsssgwtagaaayyvgy
lqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrf
pnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklnd
lcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggny
nylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyr
vvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdi
adttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqgvnctevpvaihadql
tptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslga
ensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfct
qlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedl
lfnkvtladagfikdlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaa
lqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvn
qnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqli
raaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqek
nfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigiv
nntvydplqpeldsfkeeldkyfknhtsp