PDB entry 7krp

View 7krp on RCSB PDB site
Description: structure of sars-cov-2 backtracked complex complex bound to nsp13 helicase - btc (local refinement)
Deposited on 2020-11-20, released 2021-04-21
The last revision was dated 2021-05-05, with a file datestamp of 2021-04-30.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Non-structural protein 8
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Non-structural protein 7
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Non-structural protein 8
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: RNA (37-mer)
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
  • Chain 'T':
    Compound: RNA (36-mer)
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
  • Heterogens: ZN, MG, ADP, 1N7

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7krpA (A:)
sadaqsflnrvcgvsaarltpcgtgtstdvvyrafdiyndkvagfakflktnccrfqekd
eddnlidsyfvvkrhtfsnyqheetiynllkdcpavakhdffkfridgdmvphisrqrlt
kytmadlvyalrhfdegncdtlkeilvtynccdddyfnkkdwydfvenpdilrvyanlge
rvrqallktvqfcdamrnagivgvltldnqdlngnwydfgdfiqttpgsgvpvvdsyysl
lmpiltltraltaeshvdtdltkpyikwdllkydfteerlklfdryfkywdqtyhpncvn
clddrcilhcanfnvlfstvfpptsfgplvrkifvdgvpfvvstgyhfrelgvvhnqdvn
lhssrlsfkellvyaadpamhaasgnllldkrttcfsvaaltnnvafqtvkpgnfnkdfy
dfavskgffkegssvelkhfffaqdgnaaisdydyyrynlptmcdirqllfvvevvdkyf
dcydggcinanqvivnnldksagfpfnkwgkarlyydsmsyedqdalfaytkrnviptit
qmnlkyaisaknrartvagvsicstmtnrqfhqkllksiaatrgatvvigtskfyggwhn
mlktvysdvenphlmgwdypkcdrampnmlrimaslvlarkhttccslshrfyrlaneca
qvlsemvmcggslyvkpggtssgdattayansvfnicqavtanvnallstdgnkiadkyv
rnlqhrlyeclyrnrdvdtdfvnefyaylrkhfsmmilsddavvcfnstyasqglvasik
nfksvlyyqnnvfmseakcwtetdltkgphefcsqhtmlvkqgddyvylpypdpsrilga
gcfvddivktdgtlmierfvslaidaypltkhpnqeyadvfhlylqyirklhdeltghml
dmysvmltndntsrywepefyeamytphtvlq

    Sequence, based on observed residues (ATOM records):
    >7krpA (A:)
daqsflnrvcgvsaarltpcgtgtstdvvyrafdiyndkvagfakflktnccrfqekded
dnlidsyfvvkrhtfsnyqheetiynllkdcpavakhdffkfridgdmvphisrqrltky
tmadlvyalrhfdegncdtlkeilvtynccdddyfnkkdwydfvenpdilrvyanlgerv
rqallktvqfcdamrnagivgvltldnqdlngnwydfgdfiqttpgsgvpvvdsyysllm
piltltraltaeshvdtdltkpyikwdllkydfteerlklfdryfkywdqtyhpncvncl
ddrcilhcanfnvlfstvfpptsfgplvrkifvdgvpfvvstgyhfrelgvvhnqdvnlh
ssrlsfkellvyaadpamhaasgnllldkrttcfsvaaltnnvafqtvkpgnfnkdfydf
avskgffkegssvelkhfffaqdgnaaisdydyyrynlptmcdirqllfvvevvdkyfdc
ydggcinanqvivnnldksagfpfnkwgkarlyydsmsyedqdalfaytkrnviptitqm
nlkyaisaknrartvagvsicstmtnrqfhqkllksiaatrgatvvigtskfyggwhnml
ktvysdvenphlmgwdypkcdrampnmlrimaslvlarkhttccslshrfyrlanecaqv
lsemvmcggslyvkpggtssgdattayansvfnicqavtanvnallstdgnkiadkyvrn
lqhrlyeclyrnrdvdtdfvnefyaylrkhfsmmilsddavvcfnstyasqglvasiknf
ksvlyyqnnvfmseakcwtetdltkgphefcsqhtmlvkqgddyvylpypdpsrilgagc
fvddivktdgtlmierfvslaidaypltkhpnqeyadvfhlylqyirklhdeltghmldm
ysvmltndntsrywepefyeamytpht

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7krpB (B:)
maiasefsslpsyaafataqeayeqavangdsevvlkklkkslnvaksefdrdaamqrkl
ekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcvplni
iplttaaklmvvipdyntykntcdgttftyasalweiqqvvdadskivqlseismdnspn
lawplivtalransavklq

    Sequence, based on observed residues (ATOM records):
    >7krpB (B:)
fsslpsyaafataqeayeqavangdsevvlkklkkslnvaksefdrdaamqrklekmadq
amtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcvplniipltta
aklmvvipdyntykntcdgttftyasalweiqqvvdadskivqlseismdnspnlawpli
vtalra

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7krpC (C:)
gpvdmskmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsl
lsvllsmqgavdinklceemldnratlq

    Sequence, based on observed residues (ATOM records):
    >7krpC (C:)
skmsdvkctsvvllsvlqqlrvesssklwaqcvqlhndillakdtteafekmvsllsvll
smqgavdinklceem

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7krpD (D:)
maiasefsslpsyaafataqeayeqavangdsevvlkklkkslnvaksefdrdaamqrkl
ekmadqamtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcvplni
iplttaaklmvvipdyntykntcdgttftyasalweiqqvvdadskivqlseismdnspn
lawplivtalransavklq

    Sequence, based on observed residues (ATOM records):
    >7krpD (D:)
sslpsyaafataqeayeqavangdsevvlkklkkslnvaksefdrdaamqrklekmadqa
mtqmykqarsedkrakvtsamqtmlftmlrkldndalnniinnardgcvplniiplttaa
klmvvipdyntykntcdgttftyasalweiqqvvdadskivqlseismdnspnlawpliv
talra

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.