PDB entry 7kpv

View 7kpv on RCSB PDB site
Description: structure of kinase and central lobes of yeast ckm
Deposited on 2020-11-12, released 2021-01-27
The last revision was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Meiotic mRNA stability protein kinase SSN3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA polymerase II holoenzyme cyclin-like subunit
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Mediator of RNA polymerase II transcription subunit 12
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Mediator of RNA polymerase II transcription subunit 13
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kpvA (A:)
    myngkdraqnsyqpmyqrpmqvqgqqqaqsfvgkkntigsvhgkapmlmanndvftigpy
    rarkdrmrvsvlekyevigyiaagtygkvykakrqinsgtnsangsslngtnakipqfds
    tqpkssssmdmqantnalrrnllkdegvtpgrirttredvsphynsqkqtlikkpltvfy
    aikkfktekdgveqlhytgisqsacremalcrelhnkhlttlveiflerkcvhmvyeyae
    hdllqiihfhshpekrmipprmvrsimwqlldgvsylhqnwvlhrdlkpanimvtidgcv
    kigdlglarkfhnmlqtlytgdkvvvtiwyrapelllgarhytpavdlwsvgcifaelig
    lqpifkgeeakldskktvpfqvnqlqrilevlgtpdqkiwpylekypeydqitkfpkyrd
    nlatwyhsaggrdkhalsllyhllnydpikridafnalehkyftesdipvsenvfeglty
    kyparrihtndndimnlgsrtknntqasgitagaaanalgglgvnrrilaaaaaaaaavs
    gnnasdepsrkknrr
    

    Sequence, based on observed residues (ATOM records):
    >7kpvA (A:)
    lmanndvftigpyrarkdrmrvsvlekyevigyiaagtygkvykakrqikpltvfyaikk
    fkteklhytgisqsacremalcrelhnkhlttlveiflerkcvhmvyeyaehdllqiihf
    hshpekrmipprmvrsimwqlldgvsylhqnwvlhrdlkpanimvtidgcvkigdlglar
    kfhnmlqtlytgdkvvvtiwyrapelllgarhytpavdlwsvgcifaeliglqpifkgee
    akkktvpfqvnqlqrilevlgtpdqkiwpylekypeydqitkfpkyrdnlatwyhsaggr
    dkhalsllyhllnydpikridafnalehkyftesdipvsenvfegltykyparriht
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kpvB (B:)
    msgsfwtstqrhhwqytkaslakerqklwllecqlfpqglnivmdskqngieqsitknip
    ithrdlhydkdynlriycyflimklgrrlnirqyalatahiylsrflikasvreinlyml
    vttcvylackveecpqyirtlvseartlwpefippdptkvtefefylleelesylivhhp
    yqslkqivqvlkqppfqitlssddlqncwslindsyindvhllypphiiavaclfitisi
    hgkptkgsslasaaseairdpknssspvqiafnrfmaeslvdleevmdtiqeqitlydhw
    dkyheqwikfllhtlylrpasai
    

    Sequence, based on observed residues (ATOM records):
    >7kpvB (B:)
    sgsfwtstqrhhwqytkaslakerqklwllecqlfpqglnivmdknipithrdlhydkdy
    nlriycyflimklgrrlnirqyalatahiylsrflikasvreinlymlvttcvylackve
    ecpqyirtlvseartlwpefippdptkvtefefylleelesylivhhpyqslkqivqvlk
    qppfqitlssddlqncwslindsyindvhllypphiiavaclfitisihgkppknssspv
    qiafnrfmaeslvdleevmdtiqeqitlydhwdkyheqwikfllhtlylr
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7kpvC (C:)
    mnngsgrylltppddlhpyvpsskpqeqvypdfkpwehtaaedqilanfvakgfyhtpmv
    nfesisarssvheslvtqsnilsqqfdkiikiredhinkipsnstttlhgpgfqlpnrit
    ltdhrketwlhelssshtslvkigkfiphglkrrqvieqcylkfiplkraiwlikccyfi
    ewksnhkkkrsnaagaddaismhllkdwtdtfvyileklifdmtnhyndsqqlrtwkrqi
    syflkllgncyslrlinkeifhhwlvefinkmenfeflplslhilmifwndicqidtnap
    vaatitssqkepfflvtkitdmllhkyyivsssksmindenyiindikknnkiklnilki
    lsslilkifqeqslevfifptsnweiykpllfeivsnadtnqnsdmkkklelisyrnesl
    knnssirnvimsasnandfqltivtckqfpklsciqlncidtqftkllddnptefdwpty
    vdqnpltmhkiiqlilwsihpsrqfdhyesnqlvakllllrinstdedlhefqiedaiws
    lvfqlaknfsaqkrvvsymmpslyrllnilitygiikvptyirklissgllylqdsndkf
    vhvqllinlkisplmksqynmvlrnvmeydvkfyeifnfdqlveiteqikmrilsnditn
    lqlsktplsikimvaewylshlcsgilssvnrtvllkifkifcidlevfhhffkwiefiv
    yhqllsdieslealmdillcyqklfsqfindhilftktfifiykkvlkekdvpaynvtsf
    mpfwkffmknfpfvlkvdndlrielqsvyndeklkteklkndksevlkvysminnsnqav
    gqtwnfpevfqvnirfllhnseiidtntskqfqkarnnvmlliatnlkeynkfmsiflkr
    kdftnknliqlislklltfevtqnvlgleyiirllpinlenndgsyglflkyhkeqfiks
    nfekilltcyelekkyhgneceinyyeillkilitygsspkllatstkiimlllndsven
    ssniledilyystcpsetdlndiplgsgqpdndtvvtnddksddddhtvdeidhveyyvm
    mdfanlwvfqaftcfcikkimennepamamedlknfifqiieitnsndlcsqifdqlkdm
    qtiemitqivekdfctsclqnnnqkiddnyivvvieiitslsmrfqretsgmivismeny
    hllikiirqlselnegnlskreiqidavlkifsfhqdsifqriiadlsadkptspfidsi
    cklfdkisfnlrlklflyeilsslksfaiysstidapafhtsgkvelpkkllnlppfqvs
    sfvketklhsgdygeeedadqeesfslnlgigiveiaheneqkwliydkkdhkyvctfsm
    epyhfisnyntkytddmatgsndttafndscvnlslfdarferknph
    

    Sequence, based on observed residues (ATOM records):
    >7kpvC (C:)
    gsgrylltppddlhpyvpsskpqeqvypdfkpwehtaaedqilanfvakgfyhtpmvnfe
    sisarssvheslvtqsnilsqqfdkiikiredhinkipsnstttlhgpgfqlpnritltd
    hrketwlhelssshtslvkigkfiphglkrrqvieqcylkfiplkraiwlikccyfiewk
    snhkkkrsnaagaddaismhllkdwtdtfvyileklifdmtnhyndsqqlrtwkrqisyf
    lkllgncyslrlinkeifhhwlvefinkmenfeflplslhilmifwndicqidqkepffl
    vtkitdmllhkyyivsssksmindenyiindikknnkiklnilkilsslilkifqeqsle
    vfifptsnweiykpllfeivsnadtnqnsdmkkklelisyrnesfslnlgigiveiahen
    eqkwliydkkdhkyvctfsmepyhfisnyntkytddmatgsndttafndscvnlslfdar
    ferknph
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7kpvD (D:)
    mssdastyrledvlssfyrvekikkinyhqyiskaqndqwsiqmefmlrkqdpktlvall
    srdlwcfsinddpvptppaiehkpvspdkigtftadyskpnlpphyalflkalrrkiyin
    lalgshnkliqfgnacislsgvpnylvqlephlfvngdltvslcaknmglvpmkeenlee
    sflskhalylapsgirmhlapaskqgylitppkhtelllttlsvshginlqnkknlkwva
    vvpdlghlnghtptiasyltplleakklvwplhlifaqpvadienstsgdpsefhclqda
    ldaiddfiqlkqtaayrtpgssgvlssniagtnplssdgayteqfqhyknnsissqpasy
    hsvqetnkispkdfspnftgidklmlspsdqfapaflntpnnninenelfndrkqttvsn
    dlensplkteleangrslekvnnsvsktgsvdtlhnkegtleqreqnenlpsdksdsmvd
    kelfgedededlfgdsnksnstnesnksisdeitedmfemsdeeennnnksinknnkemh
    tdlgkdipffpssekpnirtmsgttkrlngkrkyldipidemtlptsplymdpgaplpve
    tprdrrksvfaplnfnpiiennvdnkyksggkfsfsplqkeealnfdismadlssseeee
    deeengssdedlkslnvrddmkpsdnistntnihepqyinyssipslqdsiikqenfnsv
    ndanitsnkegfnsiwkipqndipqtesplktvdssiqpiesnikmtlednnvtsnpsef
    tpnmvnseisnlpkdksgipeftpadpnlsfesssslpfllrhmplasipdifitptpvv
    tisekeqdildliaeqvvtdynilgnlgipkiayrgvkdcqeglitttmlqlfstfdrln
    gndtiskfynmkqpyvfvkkhhelikvkhdsqpfikflnfrppngiknfkslllsssfke
    dclsfaptlsqtyinqelgfcellkltnedppglmylkafdknkllllaaqivsycsnnk
    nsiknvppiliilpldnatltelvdkanifqviknevcakmpnielylkvipmdfirnvl
    vtvdqyvnvaisiynmlppksvkfthiahtlpekvnfrtmqqqqmqqqqqqqqqqqnnst
    gsssiiyydsyihlaysrsvdkewvfaalsdsygqgsmtktwyvgnsrgkfddacnqiwn
    ialnlaskkfgkicliltrlngilpddelmnwrrlsgrnihlavvcvddnskisfidedk
    lypsfkpiykdtrfggrmdmtrlydyeirdidqdihgivfqhpfplahsqhrcairsgal
    ikfkkcdgdtvwdkfavnllncphsdstqlletileefrnlaalnvwyglsdgedghipw
    hilavkkmmntlvhtrvkiantsaatvhtatsssiilsdk
    

    Sequence, based on observed residues (ATOM records):
    >7kpvD (D:)
    astyrledvlssfyrvekikkinyhqyiskaqndqwsiqmefmlrkqdpktlvallsrdl
    wcfsinddpvptppaiehkpvspdkigtftadyskpnlpphyalflkalrrkiyinlalg
    shnkliqfgnacislsgvpnylvqlephlfvngdltvslcaknmglvpmkeenleesfls
    khalylapsgirmhlapaskqgylitppkhtelllttlsvshginlqnkknlkwvavvpd
    lghlnghtptiasyltplleakklvwplhlifaqpvadienstsgdpsefhclqdaldai
    ddfiqlkqssslpfllrhmplasipdifitptpvvtisekeqdildliaeqvvtdynilg
    nlgipkiayrgvkdcqeglitttmlqlfstfdrlngndtiskfynmkqpyvfvkkhheli
    kvkhdsqpfikflnfrppngiknfkslllsssfkedclsfaptlsqtyinqelgfcellk
    ltnedppglmylkafdknkllllaaqivsycsnnknsiknvppiliilpldnatltelvd
    kanifqviknevcakmpnielylkvipmdfirnvlvtvdqyvnvaisiynmlppksvkft
    hiahtlpekvnfrtmqqsssiiyydsyihlaysrsvdkewvfaalsdsygqgsmtktwyv
    gnsrgkfddacnqiwnialnlaskkfgkicliltrlngilpddelmnwrrlsgrnihlav
    vcvddnskisfidedklypsfkpiykdtrfggrmdmtrlydyeirdidqdihgivfqhpf
    plahsqhrcairsgalikfkkcdgdtvwdkfavnllncphsdstqlletileefrnlaal
    nvwyglsdgedghipwhilavkkmmntlvhtrvkia