PDB entry 7kng

View 7kng on RCSB PDB site
Description: 2.10a resolution structure of independent phosphoglycerate mutase from c. elegans in complex with a macrocyclic peptide inhibitor (ce-2 y7f)
Deposited on 2020-11-04, released 2021-04-07
The last revision was dated 2021-07-14, with a file datestamp of 2021-07-09.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
    Species: Caenorhabditis elegans [TaxId:6239]
    Gene: ipgm-1, F57B10.3
    Database cross-references and differences (RAF-indexed):
    • Uniprot G5EFZ1 (0-520)
      • expression tag (521-537)
  • Chain 'B':
    Compound: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
    Species: Caenorhabditis elegans [TaxId:6239]
    Gene: ipgm-1, F57B10.3
    Database cross-references and differences (RAF-indexed):
    • Uniprot G5EFZ1 (0-520)
      • expression tag (521-537)
  • Chain 'C':
    Compound: dty-asp-tyr-pro-gly-asp-phe-cys-tyr-leu-tyr-gly-thr-cys
    Species: Caenorhabditis elegans, synthetic [TaxId:6239]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KNG
  • Chain 'D':
    Compound: dty-asp-tyr-pro-gly-asp-phe-cys-tyr-leu-tyr-gly-thr-cys
    Species: Caenorhabditis elegans, synthetic [TaxId:6239]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KNG
  • Heterogens: DTY, CL, NA, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kngA (A:)
mamannssvankvclividgwgvsedpygnailnaqtpvmdklcsgnwaqieahglhvgl
peglmgnsevghlnigagrviyqdivrinlavknnkfvtneslvdacdrakngngrlhla
glvsdggvhshidhmfalvkaikelgvpelylhfygdgrdtspnsgvgfleqtleflekt
tgygklatvvgryyamdrdnrwerinvayeamiggvgetsdeagvvevvrkryaadetde
flkpiilqgekgrvqnddtiiffdyradrmreisaamgmdrykdcnsklahpsnlqvygm
tqykaefpfkslfppasnknvlaewlaeqkvsqfhcaetekyahvtfffngglekqfege
erclvpspkvatydlqpemsaagvadkmieqleagthpfimcnfappdmvghtgvyeaav
kaceatdiaigriyeatqkhgyslmvtadhgnaekmkapdggkhtahtcyrvpltlshpg
fkfvdpadrhpalcdvaptvlaimglpqpaemtgvsivqkiklaaalehhhhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >7kngA (A:)
amannssvankvclividgwgvsedpygnailnaqtpvmdklcsgnwaqieahglhvglp
eglmgnsevghlnigagrviyqdivrinlavknnkfvtneslvdacdrakngngrlhlag
lvsdggvhshidhmfalvkaikelgvpelylhfygdgrdtspnsgvgfleqtleflektt
gygklatvvgryyamdrdnrwerinvayeamiggvgetsdeagvvevvrkryaadetdef
lkpiilqgekgrvqnddtiiffdyradrmreisaamgmdrykdcnsklahpsnlqvygmt
qykaefpfkslfppasnknvlaewlaeqkvsqfhcaetekyahvtfffngglekqfegee
rclvpspkvatydlqpemsaagvadkmieqleagthpfimcnfappdmvghtgvyeaavk
aceatdiaigriyeatqkhgyslmvtadhgnaekmkapdggkhtahtcyrvpltlshpgf
kfvdpadrhpalcdvaptvlaimglpqpaemtgvsivqk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kngB (B:)
mamannssvankvclividgwgvsedpygnailnaqtpvmdklcsgnwaqieahglhvgl
peglmgnsevghlnigagrviyqdivrinlavknnkfvtneslvdacdrakngngrlhla
glvsdggvhshidhmfalvkaikelgvpelylhfygdgrdtspnsgvgfleqtleflekt
tgygklatvvgryyamdrdnrwerinvayeamiggvgetsdeagvvevvrkryaadetde
flkpiilqgekgrvqnddtiiffdyradrmreisaamgmdrykdcnsklahpsnlqvygm
tqykaefpfkslfppasnknvlaewlaeqkvsqfhcaetekyahvtfffngglekqfege
erclvpspkvatydlqpemsaagvadkmieqleagthpfimcnfappdmvghtgvyeaav
kaceatdiaigriyeatqkhgyslmvtadhgnaekmkapdggkhtahtcyrvpltlshpg
fkfvdpadrhpalcdvaptvlaimglpqpaemtgvsivqkiklaaalehhhhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >7kngB (B:)
amannssvankvclividgwgvsedpygnailnaqtpvmdklcsgnwaqieahglhvglp
eglmgnsevghlnigagrviyqdivrinlavknnkfvtneslvdacdrakngngrlhlag
lvsdggvhshidhmfalvkaikelgvpelylhfygdgrdtspnsgvgfleqtleflektt
gygklatvvgryyamdrdnrwerinvayeamiggvgetsdeagvvevvrkryaadetdef
lkpiilqgekgrvqnddtiiffdyradrmreisaamgmdrykdcnsklahpsnlqvygmt
qykaefpfkslfppasnknvlaewlaeqkvsqfhcaetekyahvtfffngglekqfegee
rclvpspkvatydlqpemsaagvadkmieqleagthpfimcnfappdmvghtgvyeaavk
aceatdiaigriyeatqkhgyslmvtadhgnaekmkapdggkhtahtcyrvpltlshpgf
kfvdpadrhpalcdvaptvlaimglpqpaemtgvsivqki

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >7kngC (C:)
ydypgdfcylygtc

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >7kngD (D:)
ydypgdfcylygtc