PDB entry 7kmy

View 7kmy on RCSB PDB site
Description: structure of mtb lpd bound to 010705
Deposited on 2020-11-03, released 2021-01-27
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Chain 'B':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Chain 'C':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Chain 'D':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Chain 'I':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Chain 'J':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Chain 'M':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Chain 'N':
    Compound: Dihydrolipoyl dehydrogenase
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:1773]
    Gene: lpdC, lpd, Rv0462, MTV038.06
    Database cross-references and differences (RAF-indexed):
    • Uniprot P9WHH9 (2-465)
      • expression tag (1)
  • Heterogens: WPM, FAD, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kmyA (A:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyA (A:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kmyB (B:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyB (B:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7kmyC (C:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyC (C:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7kmyD (D:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyD (D:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7kmyI (I:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyI (I:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

  • Chain 'J':
    Sequence, based on SEQRES records:
    >7kmyJ (J:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyJ (J:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

  • Chain 'M':
    Sequence, based on SEQRES records:
    >7kmyM (M:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyM (M:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

  • Chain 'N':
    Sequence, based on SEQRES records:
    >7kmyN (N:)
gsmthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnael
vhiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfada
ntllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiag
agaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesi
adggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymr
tnvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasf
glteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvae
llpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf

    Sequence, based on observed residues (ATOM records):
    >7kmyN (N:)
smthydvvvlgagpggyvaairaaqlglstaivepkywggvclnvgcipskallrnaelv
hiftkdakafgisgevtfdygiaydrsrkvaegrvagvhflmkknkiteihgygtfadan
tllvdlndggtesvtfdnaiiatgsstrlvpgtslsanvvtyeeqilsrelpksiiiaga
gaigmefgyvlknygvdvtiveflpralpnedadvskeiekqfkklgvtiltatkvesia
dggsqvtvtvtkdgvaqelkaekvlqaigfapnvegygldkagvaltdrkaigvddymrt
nvghiyaigdvngllqlahvaeaqgvvaaetiagaetltlgdhrmlpratfcqpnvasfg
lteqqarnegydvvvakfpftanakahgvgdpsgfvklvadakhgellgghlvghdvael
lpeltlaqrwdltaselarnvhthptmsealqecfhglvghminf