PDB entry 7kmt

View 7kmt on RCSB PDB site
Description: structure of the yeast trappiii-ypt1(rab1) complex
Deposited on 2020-11-03, released 2021-06-02
The last revision was dated 2021-06-23, with a file datestamp of 2021-06-18.
Experiment type: EM
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GTP-binding protein YPT1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: YPT1, YP2, YFL038C
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Trafficking protein particle complex III-specific subunit 85
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TRS85, GSG1, MUM1, YDR108W, YD9727.04
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Trafficking protein particle complex subunit 33
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TRS33, YOR115C, O3251, YOR3251C
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Trafficking protein particle complex subunit BET3
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: BET3, YKR068C
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Trafficking protein particle complex subunit BET5
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: BET5, YML077W
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Trafficking protein particle complex subunit 23
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TRS23, YDR246W, YD8419.13
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Trafficking protein particle complex subunit BET3
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: BET3, YKR068C
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Trafficking protein particle complex subunit 31
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TRS31, YDR472W
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Trafficking protein particle complex subunit 20
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: TRS20, YBR254C, YBR1722
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PLM

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kmtA (A:)
mnseydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklq
iwdtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvg
nkcdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlne
ttqkkedkgnvnlkgqsltntgggcc

    Sequence, based on observed residues (ATOM records):
    >7kmtA (A:)
eydylfklllignsgvgksclllrfsddtdyistigvdfkiktveldgktvklqiwdtag
qerfrtitssyyrgshgiiivydvtqesfngvkmwlqeidryatstvlkllvgnkcdrvv
eydvakefadankmpfletsastnvedafltmarqikesmsqqnlvnlkgqslt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kmtB (B:)
mgsshhhhhhsqenlyfqgmvfsyehymnllfhldnsketvppeiakriisnaiapvitv
tstplfdkhiqetykvdslymllrffggcvsdrdqaneakvgqhehevcdasdstdsipk
nknlevpnlskkgsrsrsnslfqrdstqsqyirftrplgdlietrdandmlfnyhslevf
ldnylklvaantdemvphnllkksiyhsffslaisstnnlspyetfnhpilslialdisn
gevyedardllvnfknlnhntenfpifmntnemlpvfllcynddsqeefekcqalakklk
kqlfvesillalwkdsfiydensviqlhqpvmssleeilfflqaptqttlslalinsiyd
mldylvydlmipfmkrkvsfweetilqprkslfngakffkkfmnknpvngnhqhnsltrd
sqgneyfasssseflmrkladwsmmlsdfktaystyeslmddldafpkylasciewcavs
llmgaqsivtvkmikndinplieralatyencsriqrgkgkesnsldvtepvrsyetrcm
ilaselflslsntwtstpyaiqyletildecklgpcsqimvwerlsdcynlrvdprikhr
vgamkkdakdtedlrgehkystdhftdedilsegltrrrkaaffrliaakkwaeqkqwrq
vswclkdiestyseikflhgnglilsklknqlnlkdvdsaprpseknltrtsvsfig

    Sequence, based on observed residues (ATOM records):
    >7kmtB (B:)
fsyehymnllfsketvppeiakriisnaiapvitvtplfdkhiqetykvdslymllrffg
gcvsdrdqasqyirftrplglfnyhslevfldnylklvaantvphnllkksiyhsffsla
isstnnlspyetfnhpilslialdisngevyedardllvnfknnfpifmntnemlpvfll
cyndqeefekcqalakklkkqlvesillalqlhqpvmssleeilfflqattlslalinsi
ydmldylvydlmipfmkrkvsfweetilasssseflmrkladwsmmlsdfktaystyesl
mdfpkylasciewcavsllmgvtvkmikndinplieralatyencsriqetrcmilasel
flslsntwtstpyaiqyletildlgpcsqimvwerlsdcynlrvdprikedilsegltrr
rkaaffrliaakkwaeqkqwrqvswclkdiestyseikflhgnglilsklknqln

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7kmtE (E:)
mssthsnnvghpqsspqgplteqqraqqqyqifenslpkvsqsvyqmllnemvplamgie
rqisgdvissdsnvtsengninnmikrlkieehhtvdiirshnlihelykadeeekekvl
arlrnigfqiglklsellifsnnpnlkfkemdlllimkficrdvwkqifgkqidnlktnh
rgtfylldydyrpiqsfsleedakneelkmiepfleipvgiirgvlsslgysseevicla
sfidrptdrpktafpkgvsfhvqvtmpq

    Sequence, based on observed residues (ATOM records):
    >7kmtE (E:)
lpkvsqsvyqmllnemvplamgierqislkieehhtvdiirshnlihelykadeeekekv
larlrnigfqiglklselllimkficrdvwkqifgkqidnlktntfylldydyrpiqsfs
leedakneelkmiepfleipvgiirgvlsslgysseeviclasfidrafpkgvsfhvq

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7kmtF (F:)
mvsttqsrslkamgeeiwknktekintelftltygsivaqlcqdyerdfnkvndhlysmg
ynigcrliedflartalprcenlvktsevlskcafkiflnitpnitnwshnkdtfslild
enpladfvelpmdamkslwysnilcgvlkgslemvqldcdvwfvsdilrgdsqteikvkl
nrilkdeipiged

    Sequence, based on observed residues (ATOM records):
    >7kmtF (F:)
slkamgeeiwknktekintelftltygsivaqlcqdyerdfnkvndhlysmgynigcrli
edflartalprcenlvktsevlskcafkiflnitpnitnwshnkdtfslildenpladfv
elpmdamkslwysnilcgvlkgslemvqldcdvwfvsdilrgdsqteikvklnrilkdei
pi

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7kmtG (G:)
mgiysfwifdrhcncifdrewtlasnsasgtinskqneedakllygmifslrsitqklsk
gsvkndirsistgkyrvhtyctasglwfvllsdfkqqsytqvlqyiyshiyvkyvsnnll
spydfaenenemrgqgtrkitnrnfisvlesflapmvnq

    Sequence, based on observed residues (ATOM records):
    >7kmtG (G:)
giysfwifdrhcncifdrewtlasnsasgtinskqneedakllygmifslrsitqklskg
svkndirsistgkyrvhtyctasglwfvllsdfkqqsytqvlqyiyshiyvkyvsnnlls
pydfaenenemrgqgtrkitnrnfisvlesflapmv

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7kmtH (H:)
maietilvinksggliyqrnftndeqklnsneylilastlhgvfaiasqltpkalqltqq
tnientipyipyvgmssnrsdtrngggnnnkhtnneklgsfkgddffkepftnwnksglr
qlctdqftmfiyqtltglkfvaisssvmpqrqptiattdkpdrpkstsnlaiqiadnflr
kvyclysdyvmkdpsysmempirsnlfdekvkkmvenlq

    Sequence, based on observed residues (ATOM records):
    >7kmtH (H:)
aietilvinksggliyqrnftndeqklnsneylilastlhgvfaiasqltpkalqntipy
ipyvgmsklgsfkgddffkepftnwnksglrqlctdqftmfiyqtltglkfvaisssvnl
aiqiadnflrkvyclysdyvmkdpsysmempirsnlfdekvkkmvenlq

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7kmtI (I:)
mvsttqsrslkamgeeiwknktekintelftltygsivaqlcqdyerdfnkvndhlysmg
ynigcrliedflartalprcenlvktsevlskcafkiflnitpnitnwshnkdtfslild
enpladfvelpmdamkslwysnilcgvlkgslemvqldcdvwfvsdilrgdsqteikvkl
nrilkdeipiged

    Sequence, based on observed residues (ATOM records):
    >7kmtI (I:)
slkamgeeiwknktekintelftltygsivaqlcqdyerdfnkvndhlysmgynigcrli
edflartalprcenlvktsevlskcafkiflnitpnitnwshnkdtfslildenpladfv
elpmdamkslwysnilcgvlkgslemvqldcdvwfvsdilrgdsqteikvklnrilkdei
pi

  • Chain 'J':
    Sequence, based on SEQRES records:
    >7kmtJ (J:)
msqriiqpsasdqqfpgksdgyeytvgpkqaitseasttyipsriysesllfkrqeasls
amaflfqemisqlhrtcktagdfetklsdyghnigirllellnfrasvspsslprasafl
sqnesssklsnasnspgmlansstatsasanerlqekqteslsnyitkmrrrdlkildil
qfihgtlwsylfnhvsddlvksserdneymivdnfptltqfipgenvsceyfvcgiikgf
lfnagfpcgvtahrmpqgghsqrtvyliqfdrqvldreglrfg

    Sequence, based on observed residues (ATOM records):
    >7kmtJ (J:)
ipsriysesllfkrqeaslsamaflfqemisqlhrtcktagdfetklsdyghnigirlle
llnfrasvsslsnyitkmrrrdlkildilqfihgtlwsylfnhvsddlvksserdneymi
vdnfptltqfipgenvsceyfvcgiikgflfnagfpcgvtahrmpqgghsqrtvyliqfd
rqvldreglrf

  • Chain 'K':
    Sequence, based on SEQRES records:
    >7kmtK (K:)
mpqyfaiigkkdnpvyeieftnaenpqgfpqdlkelnpfilhasldivedlqwqinptsq
lngnggngsnggggflrsravnntdncylgkvdhfyglaitayisysgmkfvmihgnsan
ssvviddnnmrsfyqevhelyvktlmnpfykitdpirspafdsrvrtlarkhlsk

    Sequence, based on observed residues (ATOM records):
    >7kmtK (K:)
pqyfaiigkkdnpvyeieftdlkelnpfilhasldivedlqwqinptdncylgkvdhfyg
laitayisysgmkfvmihgvviddnnmrsfyqevhelyvktlmnpfykitdpirspafds
rvrtlarkhls