PDB entry 7kmb

View 7kmb on RCSB PDB site
Description: ace2-rbd focused refinement using symmetry expansion of applied c3 for triple ace2-bound sars-cov-2 trimer spike at ph 7.4
Deposited on 2020-11-02, released 2020-12-09
The last revision was dated 2021-12-15, with a file datestamp of 2021-12-10.
Experiment type: EM
Resolution: 3.39 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'F':
    Compound: Angiotensin-converting enzyme 2
    Species: Homo sapiens [TaxId:9606]
    Gene: ACE2, UNQ868/PRO1885
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2 (0-1192)
      • conflict (666-667)
      • conflict (669)
      • conflict (970-971)
      • expression tag (1193-1272)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7kmbF (F:)
    stieeqaktfldkfnheaedlfyqsslaswnyntniteenvqnmnnagdkwsaflkeqst
    laqmyplqeiqnltvklqlqalqqngssvlsedkskrlntilntmstiystgkvcnpdnp
    qeclllepglneimansldynerlwaweswrsevgkqlrplyeeyvvlknemaranhyed
    ygdywrgdyevngvdgydysrgqliedvehtfeeikplyehlhayvraklmnaypsyisp
    igclpahllgdmwgrfwtnlysltvpfgqkpnidvtdamvdqawdaqrifkeaekffvsv
    glpnmtqgfwensmltdpgnvqkavchptawdlgkgdfrilmctkvtmddfltahhemgh
    iqydmayaaqpfllrnganegfheavgeimslsaatpkhlksigllspdfqedneteinf
    llkqaltivgtlpftymlekwrwmvfkgeipkdqwmkkwwemkreivgvvepvphdetyc
    dpaslfhvsndysfiryytrtlyqfqfqealcqaakhegplhkcdisnsteagqklfnml
    rlgksepwtlalenvvgaknmnvrpllnyfeplftwlkdqnknsfvgwstdwspyad
    

    Sequence, based on observed residues (ATOM records):
    >7kmbF (F:)
    stieeqaktfldkfnheaedlfyqsslaswnyntniteenvqnmnnagdkwsaflkeqst
    laqmyplqeiqnltvklqlqalqqngssvlsedkskrlntilntmstiystgkvcnpdnp
    qeclllepglneimansldynerlwaweswrsevgkqlrplyeeyvvlknemaranhyed
    ygdywrgdyevngvdgydysrgqliedvehtfeeikplyehlhayvraklmnaypsyisp
    igclpahllgdmwgrfwtnlysltvpfgqkpnidvtdamvdqawdaqrifkeaekffvsv
    glpnmtqgfwensmltdpgnvqkavchptawdlgkgdfrilmctkvtmddfltahhemgh
    iqydmayaaqpfllrnganegfheavgeimslsaatpkhlksigllspdfqedneteinf
    llkqaltivgtlpftymlekwrwmvfkgeipkdqwmkkwwemkreivgvvepvphdetyc
    dpaslfhvsndysfiryytrtlyqfqfqealcqaakhegplhkcdisnsteagqklfnml
    rlgksepwtlalenvvgaknmnvrpllnyfeplftwlkdqnknsfvgwstdwspya
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7kmbG (G:)
    vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng
    tkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqf
    cndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfk
    nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss
    sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqt
    snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfs
    tfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvia
    wnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy
    gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltes
    nkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdv
    nctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyq
    tqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts
    vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppik
    dfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqkf
    ngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnv
    lyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss
    vlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg
    qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvf
    vsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldky
    fknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyipe
    aprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsgggg
    sggsawshpqfek
    

    Sequence, based on observed residues (ATOM records):
    >7kmbG (G:)
    lcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftn
    vyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyr
    lfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvls
    fellhapatvcg