PDB entry 7ki6

View 7ki6 on RCSB PDB site
Description: Structure of the HeV F glycoprotein in complex with the 1F5 neutralizing antibody
Class: viral protein/immune system
Keywords: Nipah virus, Hendra virus, henipavirus, neutralizing antibody, monoclonal antibody, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2020-10-23, released 2021-05-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-23, with a file datestamp of 2021-06-18.
Experiment type: EM
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fusion glycoprotein F0
    Species: Hendra henipavirus [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
    • Uniprot F4YH70
      • conflict (262)
  • Chain 'B':
    Compound: Fusion glycoprotein F0
    Species: Hendra henipavirus [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
    • Uniprot F4YH70
      • conflict (262)
  • Chain 'C':
    Compound: 1F5 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KI6 (0-End)
    Domains in SCOPe 2.08: d7ki6c1
  • Chain 'D':
    Compound: 1F5 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KI6 (0-End)
  • Chain 'E':
    Compound: Fusion glycoprotein F0
    Species: Hendra henipavirus [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
    • Uniprot F4YH70
      • conflict (262)
  • Chain 'F':
    Compound: 1F5 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KI6 (0-End)
    Domains in SCOPe 2.08: d7ki6f1
  • Chain 'G':
    Compound: 1F5 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KI6 (0-End)
  • Chain 'H':
    Compound: 1F5 heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KI6 (0-End)
  • Chain 'L':
    Compound: 1F5 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KI6 (0-End)
    Domains in SCOPe 2.08: d7ki6l1
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7ki6C (C:)
qivltqspaimsaslgeaitltcsasssvsymhwyqqksgtspklliystsnlasgvpsr
fsgsgsgtfysltissveaedaadyychqwysypwtfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >7ki6C (C:)
qivltqspaimsaslgeaitltcsasssvsymhwyqqksgtspklliystsnlasgvpsr
fsgsgsgtfysltissveaedaadyychqwysypwtfgggtkleikra

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7ki6F (F:)
qivltqspaimsaslgeaitltcsasssvsymhwyqqksgtspklliystsnlasgvpsr
fsgsgsgtfysltissveaedaadyychqwysypwtfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >7ki6F (F:)
qivltqspaimsaslgeaitltcsasssvsymhwyqqksgtspklliystsnlasgvpsr
fsgsgsgtfysltissveaedaadyychqwysypwtfgggtkleikra

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7ki6L (L:)
qivltqspaimsaslgeaitltcsasssvsymhwyqqksgtspklliystsnlasgvpsr
fsgsgsgtfysltissveaedaadyychqwysypwtfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >7ki6L (L:)
qivltqspaimsaslgeaitltcsasssvsymhwyqqksgtspklliystsnlasgvpsr
fsgsgsgtfysltissveaedaadyychqwysypwtfgggtkleikra