PDB entry 7kdp

View 7kdp on RCSB PDB site
Description: hcmv prefusion gb in complex with fusion inhibitor way-174865
Deposited on 2020-10-09, released 2021-03-17
The last revision was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope glycoprotein B
    Species: Human cytomegalovirus (strain Towne) [TaxId:10363]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Envelope glycoprotein B
    Species: Human cytomegalovirus (strain Towne) [TaxId:10363]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Envelope glycoprotein B
    Species: Human cytomegalovirus (strain Towne) [TaxId:10363]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: WCY, NAG, CA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kdpA (A:)
mesriwclvvcvnlcivclgaavsssstrgtsathshhsshttsaahsrsgsvsqrvtss
qtvshgvnetiynttlkygdvvgvnttkypyrvcsmaqgtdlirfernivctsmkpined
ldegimvvykrnivahtfkvrvyqkvltfrrsyayihttyllgsnteyvappmweihhin
shsqcyssysrviagtvfvayhrdsyenktmqlmpddysnthstryvtvkdqwhsrgstw
lyretcnlncmvtittarskypyhffatstgdvvdispfyngtnrnasyfgenadkffif
pnytivsdfgrpnsalethrlvafleradsviswdiqdeknvtcqltfweasertirsea
edsyhfssakmtatflskkqevnmsdsaldcvrdeainklqqifntsynqtyekygnvsv
fettgglvvfwqgikqkslvelerlanrsslnlthnrtkrstdgnnathlsnmesvhnlv
yaqlqftydtlrgyinralaqiaeawcvdqrrtlevfkelskinpsailsaiynkpiaar
fmgdvlglascvtinqtsvkvlrdmnvkespgrcysrpvvifnfanssyvqygqlgedne
illgnhrteecqlpslkifiagnsayeyvdylfkrmidlssistvdsmialdidplentd
frvlelysqkelrssnvfdleeimrefnsykqrvkyvedkvvdplppylkglddlmsglg
aagkavgvaigavggavasvvegvatflknpfgaftiilvaiavviiiyliytrqrrlcm
qplqnlfpylvsadgttvtsgntkdtslqappsyeesvynsgrkgpgppssdastaappy
tneqayqmllalvrldaeqraqqngtdsldgqtgtqdkgqkpnlldrlrhrkngyrhlkd
sdeeenv

    Sequence, based on observed residues (ATOM records):
    >7kdpA (A:)
ttkypyrvcsmaqgtdlirfernivctsmkpinedldegimvvykrnivahtfkvrvyqk
vltfrrsyayihttyllgsnteyvappmweihhinshsqcyssysrviagtvfvayhrds
yenktmqlmpddysnthstryvtvkdqwhsrgstwlyretcnlncmvtittarskypyhf
fatstgdvvdispfyngtnrnasyfgenadkffifpnytivsdfgrpnsalethrlvafl
eradsviswdiqdeknvtcqltfweasertirseaedsyhfssakmtatflskkqevnms
dsaldcvrdeainklqqifntsynqtyekygnvsvfettgglvvfwqgikqqlqftydtl
rgyinralaqiaeawcvdqrrtlevfkelskinpsailsaiynkpiaarfmgdvlglasc
vtinqtsvkvlrdmnvkespgrcysrpvvifnfanssyvqygqlgedneillgnhrteec
qlpslkifiagnsayeyvdylfkrmidlssistvdsmialdidplentdfrvlelysqke
lrssnvfdleeimrefnsykqrvkyvedkvvdplppylkglddlmsglgaagkavgvaig
avggavasvvegvatflknpfgaftiilvaiavviiiy

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kdpB (B:)
mesriwclvvcvnlcivclgaavsssstrgtsathshhsshttsaahsrsgsvsqrvtss
qtvshgvnetiynttlkygdvvgvnttkypyrvcsmaqgtdlirfernivctsmkpined
ldegimvvykrnivahtfkvrvyqkvltfrrsyayihttyllgsnteyvappmweihhin
shsqcyssysrviagtvfvayhrdsyenktmqlmpddysnthstryvtvkdqwhsrgstw
lyretcnlncmvtittarskypyhffatstgdvvdispfyngtnrnasyfgenadkffif
pnytivsdfgrpnsalethrlvafleradsviswdiqdeknvtcqltfweasertirsea
edsyhfssakmtatflskkqevnmsdsaldcvrdeainklqqifntsynqtyekygnvsv
fettgglvvfwqgikqkslvelerlanrsslnlthnrtkrstdgnnathlsnmesvhnlv
yaqlqftydtlrgyinralaqiaeawcvdqrrtlevfkelskinpsailsaiynkpiaar
fmgdvlglascvtinqtsvkvlrdmnvkespgrcysrpvvifnfanssyvqygqlgedne
illgnhrteecqlpslkifiagnsayeyvdylfkrmidlssistvdsmialdidplentd
frvlelysqkelrssnvfdleeimrefnsykqrvkyvedkvvdplppylkglddlmsglg
aagkavgvaigavggavasvvegvatflknpfgaftiilvaiavviiiyliytrqrrlcm
qplqnlfpylvsadgttvtsgntkdtslqappsyeesvynsgrkgpgppssdastaappy
tneqayqmllalvrldaeqraqqngtdsldgqtgtqdkgqkpnlldrlrhrkngyrhlkd
sdeeenv

    Sequence, based on observed residues (ATOM records):
    >7kdpB (B:)
ttkypyrvcsmaqgtdlirfernivctsmkpinedldegimvvykrnivahtfkvrvyqk
vltfrrsyayihttyllgsnteyvappmweihhinshsqcyssysrviagtvfvayhrds
yenktmqlmpddysnthstryvtvkdqwhsrgstwlyretcnlncmvtittarskypyhf
fatstgdvvdispfyngtnrnasyfgenadkffifpnytivsdfgrpnsalethrlvafl
eradsviswdiqdeknvtcqltfweasertirseaedsyhfssakmtatflskkqevnms
dsaldcvrdeainklqqifntsynqtyekygnvsvfettgglvvfwqgikqqlqftydtl
rgyinralaqiaeawcvdqrrtlevfkelskinpsailsaiynkpiaarfmgdvlglasc
vtinqtsvkvlrdmnvkespgrcysrpvvifnfanssyvqygqlgedneillgnhrteec
qlpslkifiagnsayeyvdylfkrmidlssistvdsmialdidplentdfrvlelysqke
lrssnvfdleeimrefnsykqrvkyvedkvvdplppylkglddlmsglgaagkavgvaig
avggavasvvegvatflknpfgaftiilvaiavviiiy

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7kdpC (C:)
mesriwclvvcvnlcivclgaavsssstrgtsathshhsshttsaahsrsgsvsqrvtss
qtvshgvnetiynttlkygdvvgvnttkypyrvcsmaqgtdlirfernivctsmkpined
ldegimvvykrnivahtfkvrvyqkvltfrrsyayihttyllgsnteyvappmweihhin
shsqcyssysrviagtvfvayhrdsyenktmqlmpddysnthstryvtvkdqwhsrgstw
lyretcnlncmvtittarskypyhffatstgdvvdispfyngtnrnasyfgenadkffif
pnytivsdfgrpnsalethrlvafleradsviswdiqdeknvtcqltfweasertirsea
edsyhfssakmtatflskkqevnmsdsaldcvrdeainklqqifntsynqtyekygnvsv
fettgglvvfwqgikqkslvelerlanrsslnlthnrtkrstdgnnathlsnmesvhnlv
yaqlqftydtlrgyinralaqiaeawcvdqrrtlevfkelskinpsailsaiynkpiaar
fmgdvlglascvtinqtsvkvlrdmnvkespgrcysrpvvifnfanssyvqygqlgedne
illgnhrteecqlpslkifiagnsayeyvdylfkrmidlssistvdsmialdidplentd
frvlelysqkelrssnvfdleeimrefnsykqrvkyvedkvvdplppylkglddlmsglg
aagkavgvaigavggavasvvegvatflknpfgaftiilvaiavviiiyliytrqrrlcm
qplqnlfpylvsadgttvtsgntkdtslqappsyeesvynsgrkgpgppssdastaappy
tneqayqmllalvrldaeqraqqngtdsldgqtgtqdkgqkpnlldrlrhrkngyrhlkd
sdeeenv

    Sequence, based on observed residues (ATOM records):
    >7kdpC (C:)
ttkypyrvcsmaqgtdlirfernivctsmkpinedldegimvvykrnivahtfkvrvyqk
vltfrrsyayihttyllgsnteyvappmweihhinshsqcyssysrviagtvfvayhrds
yenktmqlmpddysnthstryvtvkdqwhsrgstwlyretcnlncmvtittarskypyhf
fatstgdvvdispfyngtnrnasyfgenadkffifpnytivsdfgrpnsalethrlvafl
eradsviswdiqdeknvtcqltfweasertirseaedsyhfssakmtatflskkqevnms
dsaldcvrdeainklqqifntsynqtyekygnvsvfettgglvvfwqgikqqlqftydtl
rgyinralaqiaeawcvdqrrtlevfkelskinpsailsaiynkpiaarfmgdvlglasc
vtinqtsvkvlrdmnvkespgrcysrpvvifnfanssyvqygqlgedneillgnhrteec
qlpslkifiagnsayeyvdylfkrmidlssistvdsmialdidplentdfrvlelysqke
lrssnvfdleeimrefnsykqrvkyvedkvvdplppylkglddlmsglgaagkavgvaig
avggavasvvegvatflknpfgaftiilvaiavviiiy