PDB entry 7kap

View 7kap on RCSB PDB site
Description: cryo-em structure of the sec complex from s. cerevisiae, sec61 pore mutant, class with sec62, conformation 1 (c1)
Deposited on 2020-10-01, released 2021-01-06
The last revision was dated 2021-02-24, with a file datestamp of 2021-02-19.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein transport protein SEC61
    Species: Saccharomyces cerevisiae BY4741 [TaxId:1247190]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32915
      • variant (89)
      • variant (184)
      • variant (293)
      • variant (449)
  • Chain 'B':
    Compound: Protein transport protein SBH1
    Species: Saccharomyces cerevisiae BY4741 [TaxId:1247190]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: protein transport protein sss1
    Species: Saccharomyces cerevisiae BY4741 [TaxId:1247190]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein translocation protein SEC63
    Species: Saccharomyces cerevisiae BY4741 [TaxId:1247190]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Translocation protein SEC66
    Species: Saccharomyces cerevisiae BY4741 [TaxId:1247190]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Translocation protein SEC72
    Species: Saccharomyces cerevisiae BY4741 [TaxId:1247190]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Protein transport protein Sec62
    Species: Saccharomyces cerevisiae BY4741 [TaxId:1247190]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KAP (0-55)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kapA (A:)
mssnrvldlfkpfesflpeviaperkvpynqkliwtgvslliflilgqiplygivssets
dplywlramlasnrgtllelgvspiitsslifqflqgtqllqirpeskqdrelfqiaqkv
caiililgqalvvvmtgnygapsdlglpiclllifqlmfaslivmlldellskgyglgsg
islfiatniaeqifwrafapttvnsgrgkefegaviaffhllavrkdkkralveafyrtn
lpnmfqvlmtvaiflfvlylqgfryelpirstkvrgqigiypiklfytsntpiilqsalt
sniflisqilfqkyptnplirligvwgirpgtqgpqmalsglayyiqplmslsealldpi
ktivyitfvlgscavfsktwieisgtsprdiakqfkdqgmvingkretsiyrelkkiipt
aaafggatigalsvgsdllgtlgsgasillatttiygyyeaaakeggftknlvpgfsdlm

    Sequence, based on observed residues (ATOM records):
    >7kapA (A:)
pfesflpeviaperkvpynqkliwtgvslliflilgqiplygivramlasnrgtllelgv
spiitsslifqflqgtqllqirpeskqdrelfqiaqkvcaiililgqalvvvmtgnygap
lpiclllifqlmfaslivmlldellskgyglgsgislfiatniaeqifwrafapttvnsg
rgkefegaviaffhllavrkdkkralveafyrtnlpnmfqvlmtvaiflfvlylqgfrye
lpirstkvrgqigiypiklfytsntpiilqsaltsniflisqilfqkyptnplirligvw
giqmalsglayyiqplmslsealldpiktivyitfvlgscavfsktwieisgtsprdiak
qfkdqgmvingkretsiyrelkkiiptaaafggatigalsvgsdllgtlgsgasillatt
tiygyyeaaakeggf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kapB (B:)
mssptppggqrtlqkrkqgssqkvaasapkkntnsnnsilkiysdeatglrvdplvvlfl
avgfifsvvalhviskvagklf

    Sequence, based on observed residues (ATOM records):
    >7kapB (B:)
rvdplvvlflavgfifsvvalhviskvagklf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7kapC (C:)
marasekgeekkqsnnqveklveapvefvregtqflakckkpdlkeytkivkavgigfia
vgiigyaiklihipiryviv

    Sequence, based on observed residues (ATOM records):
    >7kapC (C:)
vefvregtqflakckkpdlkeytkivkavgigfiavgiigyaiklihipiryviv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7kapD (D:)
ggsggsggsggsggsptnyeydeasetwpsfiltgllmvvgpmtllqiyqiffganaedg
nsgkskefneevfknlneeytsdeikqfrrkfdknsnkkskiwsrrniiiivgwilvail
lqrinsndaikdaatklfdpyeilgistsasdrdiksayrklsvkfhpdklakgltpdek
svmeetyvqitkayesltdelvrqnylkyghpdgpqstshgialprflvdgsaspllvvc
yvallglilpyfvsrwwartqsytkkgihnvtasnfvsnlvnykpseivttdlilhwlsf
ahefkqffpdlqptdfekllqdhinrrdsgklnnakfrivakchsllhglldiacgfrnl
dialgaintfkcivqavpltpncqilqlpnvdkehfitktgdihtlgklftledakigev
lgikdqaklnetlrvashipnlkiikadflvpgenqvtpsstpyislkvlvrsakqplip
tslipeenltepqdfesqrdpfammskqplvpysfapffptkrrgswcclvssqkdgkil
qtpiiieklsyknlnddkdffdkrikmdltkhekfdindweigtikiplgqpapetvgdf
ffrvivkstdyfttdlditmnmkvrdspaveqvevyseeddeystdddetesddesdasd
ytdidtdteaeddespeaggattasgtgenlyfq

    Sequence, based on observed residues (ATOM records):
    >7kapD (D:)
nyeydeasetwpsfiltgllmvvgpmtllqiyqfneevfknlneeytsdeikqfrrkfni
iiivgwilvaillqrinsndaqstshgialprflvdgsaspllvvcyvallglilpyfvs
rwwartqsytkkgihnvtasnfvsnlvnykpseivttdlilhwlsfahefkqffpdlqpt
dfekllqdhinrrdsgklnnakfrivakchsllhglldiacgfrnldialgaintfkciv
qavpltpncqilqlpnvdkehfitktgdihtlgklftledakigevlgikdqaklnetlr
vashipnlkiikadflvpgenqvtpsstpyislkvlvrsakqpliptslipeenltepqd
fesqrdpfammskqplvpysfapffptkrrgswcclvssqkdgkilqtpiiieklsyknl
nddkdffdkrikmdltkhekfdindweigtikiplgqpapetvgdfffrvivkstdyftt
dlditmnmkvrd

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7kapE (E:)
msefnetkfsnngtffeteepivetksisvytpliyvfilvvslvmfassyrkkqakkis
eqpsifdendahdlyfqikemsenekihekvlkaallnrgaesvrrslklkelapqinll
ykngsigedywkrfetevklielefkdtlqeaerlqpgwvqlfvmvckeicfnqalsrry
qsilkrkevcikewelkinndgrlvn

    Sequence, based on observed residues (ATOM records):
    >7kapE (E:)
ndahdlyfqikemsenekihekvlkaallnrgaesvrrslklkelapqinllykngsige
dywkrfetevklielefkdtlqeaerlqpgwvqlfvmvckeicfnqalsrryqsilkrke
vcikewelkinndgrlvn

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7kapF (F:)
mvtleynansklitasdavvalstetnidqinvlttsligetnpnftpqpnealskmikg
lfesgmknlqqkklnealknvslaiemaqrkrapweafaiqlpelhfmlrskidlclilg
khlealqdldfllgtgliqpdvfvrkadcllklrqweearatcerglalapedmklrall
ietarnlaeynge

    Sequence, based on observed residues (ATOM records):
    >7kapF (F:)
tleynansklitasdavvalstetnidqinvlttsligetnpnftpqpnealskmikglf
esgmknlqqkklnealknvslaiemaqrkrapweafaiqlpelhfmlrskidlclilgkh
lealqdldfllgtgliqpdvfvrkadcllklrqweearatcerglalapedmklrallie
tarnlaeyng

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >7kapG (G:)
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