PDB entry 7kak

View 7kak on RCSB PDB site
Description: cryo-em structure of the sec complex from t. lanuginosus, wild-type, class without sec62
Deposited on 2020-10-01, released 2021-02-03
The last revision was dated 2021-02-24, with a file datestamp of 2021-02-19.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein transport channel Sec61 complex, alpha subunit (Sec61)
    Species: THERMOMYCES LANUGINOSUS [TaxId:5541]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KAK
  • Chain 'B':
    Compound: Protein transport channel Sec61 complex, beta subunit (Sbh1)
    Species: THERMOMYCES LANUGINOSUS [TaxId:5541]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KAK
  • Chain 'C':
    Compound: Protein transport channel Sec61 complex, gamma subunit (Sss1)
    Species: THERMOMYCES LANUGINOSUS [TaxId:5541]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KAK
  • Chain 'D':
    Compound: Protein transport protein Sec63
    Species: THERMOMYCES LANUGINOSUS [TaxId:5541]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KAK
  • Chain 'E':
    Compound: Protein transport protein Sec66/Sec71
    Species: THERMOMYCES LANUGINOSUS [TaxId:5541]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KAK
  • Chain 'F':
    Compound: Protein transport protein Sec72
    Species: THERMOMYCES LANUGINOSUS [TaxId:5541]
    Database cross-references and differences (RAF-indexed):
    • PDB 7KAK

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7kakA (A:)
msglrfldlikpftpllpevaapetkvpfnqklmwtgltlliflvmsqmplygivssdts
dplywlrmmlasnrgtlmelgitpiissgmvfqllagthlidvnldlktdrelyqtaqkl
faiilsfgqacvhvltglygqpsdlgagicvllivqlvvaglvvilldellqkgyglgsg
islfiatnicesivwkafspttintgrgpefegaiialfhllltwpdkqralreafyrqs
lpnimnllatllvfaaviylqgfrveipvksarqrgvrgsypvrlfytsnmpimlqsalc
snvflisqmlysrfsdnllvrllgvwepregsaqlhaasgiayymspplnfkealldpvh
tvvyitfmlvacalfsktwievsgssprdvakqlkdqglvmaghreqsmykelkrvipta
aafggacigalsvasdllgalgsgtgillavtiiygyfemaaregdfgqglrglvpgngs

    Sequence, based on observed residues (ATOM records):
    >7kakA (A:)
likpftpllpevaapetkvpfnqklmwtgltlliflvmsqmplygivssdtsdplywlrm
mlasnrgtlmelgitpiissgmvfqllagthdlktdrelyqtaqklfaiilsfgqacvhv
ltglygqpsdlgagicvllivqlvvaglvvilldellqkgyglgsgislfiatnicesiv
wkafspttintgrgpefegaiialfhllltwpdkqralreafyrqslpnimnllatllvf
aaviylqgfrveipvksarqrgvrgsypvrlfytsnmpimlqsalcsnvflisqmlysrf
sdnllvrllgvweplhaasgiayymspplnfkealldpvhtvvyitfmlvacalfsktwi
evsgssprdvakqlkdqglvmaghreqsmykelkrviptaaafggacigalsvasdllga
lgsgtgillavtiiygyfemaaregd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7kakB (B:)
massgaesgseskspnpgagsgpgsasgssagvirpssptppggpraairrraaadhkes
lrnarpsstraagaggssgtmlklytdespglrvdpvvvlvlslcfifsvvglhviakit
rkfss

    Sequence, based on observed residues (ATOM records):
    >7kakB (B:)
lrvdpvvvlvlslcfifsvvglhviakitrkf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7kakC (C:)
mseqvqelldiprdflkdgmqfihkcqkpdrkefkkvcqavaigfvamgaigyivklvhi
pinnilvags

    Sequence, based on observed residues (ATOM records):
    >7kakC (C:)
prdflkdgmqfihkcqkpdrkefkkvcqavaigfvamgaigyivklvhipinnilva

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7kakD (D:)
ggsggsggsggsggsmssreynydengqffpffvltltglvtlpltysllkppkkvesta
priksdfkpqhddiiqnqkrkrlrkerrvkraiavvvgwaiigymvyliivtrrtapkiw
dpyeilgisrsaderaiarrykrlsllyhpdkvrpdpsknetmemlnqrfveltkaykal
tdeeirnnylqyghpdgkqsysigialpkliieegsgkyvlmlyasllgillpyivgrww
ygsqrytrekvlaasagnmfreyegtmiggpivnalstgeeykemlsgpkaeeglakvek
kvlaldekilsakdrevlrkidnpvrrkalallwaylnridledpvlneekyeagsials
ltesftaialafgnlipiigayrisqcivqaispgsspllqlpyftpkvvesvegadvkt
hlsvqkyldmpeerrrsltvgpglltedqynsaiavakqlplfaiskaffkvagervvtp
sslvqlvikgriippgstgvpdvtekdledidpdeadvnaiigrkgatkpsgksgdendg
drvqpplahapylprdhpprwhifladakqgkiavppftfttfdkpifdeqgkptfnmqt
lrmqfqappqvgnfsfvlhmisdsymgfdvkqeitlqvedpskaavlqeeddisepdeds
iagqmqalktgvppkkkkvvesdddesdtegdeedtsetdtetdtdeegsgtgenlyfq

    Sequence, based on observed residues (ATOM records):
    >7kakD (D:)
eynydengqffpffvltltglvtlpltysllapriksdfkpqhddiiqnqkrkrlrkerr
vkraiavvvgwaiigymvyliivtsysigialpkliieegsgkyvlmlyasllgillpyi
vgrwwygsqrytrekvlaasagnmfreyegtmiggpivnalstgeeykemlsgpkaeegl
akvekkvlaldekilsakdrevlrkidnpvrrkalallwaylnridledpvlneekyeag
sialsltesftaialafgnlipiigayrisqcivqaispgsspllqlpyftpkvvesveg
advkthlsvqkyldmpeerrrsltvgpglltedqynsaiavakqlplfaiskaffkvage
rvvtpsslvqlvikgriipprvqpplahapylprdhpprwhifladakqgkiavppftft
tfdktfnmqtlrmqfqappqvgnfsfvlhmisdsymgfdvkqeitlqved

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7kakE (E:)
mdwltlvvpfaylgvligclatfsslyrrrkaakaaslepwfpphlqrdiyhsllhldqq
qqnekktrvpetvlkaallrraaedikrvmaireqkqalalllqrgsvgdelwqrflrae
kemedevrdvvaeansyapnwgqvifqsaremdanatyrarmeeyqatvaeerawwdkkr
asiqegfmkeldaekerpataastatnttsttsdddavlveaekegtsspapgkkkkkgk
kgs

    Sequence, based on observed residues (ATOM records):
    >7kakE (E:)
wltlvvpfaylgvligclatfsslyrrrkaakaaslepwfpphlqrdiyhsllhldqqqr
vpetvlkaallrraaedikrvmaireqkqalalllqrgsvgdelwqrflraekemedevr
dvvaeansyapnwgqvifqsaremdanatyrarmeeyqatvaeerawwdkkr

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7kakF (F:)
mssdldtythyplhldpsskavslattegqtpaqteaveaelqqlnalhrslisldppnv
pppplpinpkrsaqitklketantaykrgnhgeavrlysyaiemaagrpgwepvnlaree
lsglyanraqahmaqqmwpegwvdakcsveskpvgnakgwwrggkclvemgrydearawi
eqalgiegpasdggkelaalleeikagsqrrqgs

    Sequence, based on observed residues (ATOM records):
    >7kakF (F:)
tythyplhldpsskavslattgqtpaqteaveaelqqlnalhrslisldppnvpppplpi
npkrsaqitklketantaykrgnhgeavrlysyaiemaagrpgwepvnlareelsglyan
raqahmaqqmwpegwvdakcsveskpvgnakgwwrggkclvemgrydearawieqalgie
sdggkelaalleei