PDB entry 7k80

View 7k80 on RCSB PDB site
Description: kir3dl1*001 in complex with hla-a*24:02 presenting the rypltfgw peptide
Deposited on 2020-09-24, released 2020-12-09
The last revision was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'C':
    Compound: arg-tyr-pro-leu-thr-phe-gly-trp
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 7K80 (0-7)
  • Chain 'D':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-A
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
  • Chain 'F':
    Compound: arg-tyr-pro-leu-thr-phe-gly-trp
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 7K80 (0-7)
  • Chain 'G':
    Compound: Killer cell immunoglobulin-like receptor 3DL1
    Species: Homo sapiens [TaxId:9606]
    Gene: KIR3DL1, CD158E, NKAT3, NKB1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Killer cell immunoglobulin-like receptor 3DL1
    Species: Homo sapiens [TaxId:9606]
    Gene: KIR3DL1, CD158E, NKAT3, NKB1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FMT, ACT, NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >7k80A (A:)
gshsmryfstsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
deetgkvkahsqtdrenlrialryynqseagshtlqmmfgcdvgsdgrflrgyhqyaydg
kdyialkedlrswtaadmaaqitkrkweaahvaeqqraylegtcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >7k80B (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >7k80C (C:)
rypltfgw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >7k80D (D:)
gshsmryfstsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
deetgkvkahsqtdrenlrialryynqseagshtlqmmfgcdvgsdgrflrgyhqyaydg
kdyialkedlrswtaadmaaqitkrkweaahvaeqqraylegtcvdglrrylengketlq
rtdppkthmthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >7k80E (E:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >7k80F (F:)
rypltfgw

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7k80G (G:)
hmggqdkpflsawpsavvprgghvtlrchyrhrfnnfmlykedrihipifhgrifqesfn
mspvttahagnytcrgshphsptgwsapsnpvvimvtgnhrkpsllahpgplvksgervi
lqcwsdimfehfflhkegiskdpsrlvgqihdgvskanfsigpmmlalagtyrcygsvth
tpyqlsapsdpldivvtgpyekpslsaqpgpkvqagesvtlscssrssydmyhlsregga
herrlpavrkvnrtfqadfplgpathggtyrcfgsfrhspyewsdpsdpllvsvtgnps

    Sequence, based on observed residues (ATOM records):
    >7k80G (G:)
dkpflsawpsavvprgghvtlrchyrhrfnnfmlykedrihipifhgrifqesfnmspvt
tahagnytcrgshphsptgwsapsnpvvimvtgnhrkpsllahpgplvksgervilqcws
dimfehfflhkegiskdpsrlvgqihdgvskanfsigpmmlalagtyrcygsvthtpyql
sapsdpldivvtgpyekpslsaqpgpkvqagesvtlscssrssydmyhlsreggaherrl
pavrkvnrtfqadfplgpathggtyrcfgsfrhspyewsdpsdpllvsvt

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7k80H (H:)
hmggqdkpflsawpsavvprgghvtlrchyrhrfnnfmlykedrihipifhgrifqesfn
mspvttahagnytcrgshphsptgwsapsnpvvimvtgnhrkpsllahpgplvksgervi
lqcwsdimfehfflhkegiskdpsrlvgqihdgvskanfsigpmmlalagtyrcygsvth
tpyqlsapsdpldivvtgpyekpslsaqpgpkvqagesvtlscssrssydmyhlsregga
herrlpavrkvnrtfqadfplgpathggtyrcfgsfrhspyewsdpsdpllvsvtgnps

    Sequence, based on observed residues (ATOM records):
    >7k80H (H:)
dkpflsawpsavvprgghvtlrchyrhrfnnfmlykedrihipifhgrifqesfnmspvt
tahagnytcrgshphsptgwsapsnpvvimvtgnhrkpsllahpgplvksgervilqcws
dimfehfflhkegiskdpsrlvgqihdgvskanfsigpmmlalagtyrcygsvthtpyql
sapsdpldivvtgpyekpslsaqsvtlscssrssydmyhlsreggaherrlpavrkvnrt
fqadfplggtyrcfgsfrhspyewsdpsdpllvsv