PDB entry 7k7g

View 7k7g on RCSB PDB site
Description: nucleosome and gal4 complex
Deposited on 2020-09-22, released 2021-03-31
The last revision was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HHT1, YBR010W, YBR0201, HHT2, SIN2, YNL031C, N2749
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HHF1, YBR009C, YBR0122, HHF2, YNL030W, N2752
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: histone h2a.1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HTA1, H2A1, SPT11, YDR225W, YD9934.10
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Histone H2B.1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HTB1, H2B1, SPT12, YDR224C, YD9934.09C
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: histone h3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HHT1, YBR010W, YBR0201, HHT2, SIN2, YNL031C, N2749
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: histone h4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HHF1, YBR009C, YBR0122, HHF2, YNL030W, N2752
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h2a.1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HTA1, H2A1, SPT11, YDR225W, YD9934.10
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Histone H2B.1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: HTB1, H2B1, SPT12, YDR224C, YD9934.09C
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (147-mer)
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'J':
    Compound: DNA (147-mer)
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'M':
    Compound: Centromere DNA-binding protein complex CBF3 subunit B
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: CEP3, CBF3, CBF3B, CSL1, YMR168C, YM8520.17C
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7k7gA (A:)
martkqtarkstggkaprkqlaskaarksapstggvkkphrykpgtvalreirrfqkste
llirklpfqrlvreiaqdfktdlrfqssaigalqesveaylvslfedtnlaaihakrvti
qkkdiklarrlrgers

    Sequence, based on observed residues (ATOM records):
    >7k7gA (A:)
gtvalreirrfqkstellirklpfqrlvreiaqdfktdlrfqssaigalqesveaylvsl
fedtnlaaihakrvtiqkkdiklarrlrger

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7k7gB (B:)
msgrgkggkglgkggakrhrkilrdniqgitkpairrlarrggvkrisgliyeevravlk
sflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >7k7gB (B:)
rdniqgitkpairrlarrggvkrisgliyeevravlksflesvirdsvtytehakrktvt
sldvvyalkrqgrtlygfgg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7k7gC (C:)
msggkggkagsaakasqsrsakagltfpvgrvhrllrrgnyaqrigsgapvyltavleyl
aaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnllpk
ksakatkasqel

    Sequence, based on observed residues (ATOM records):
    >7k7gC (C:)
rsakagltfpvgrvhrllrrgnyaqrigsgapvyltavleylaaeilelagnaardnkkt
riiprhlqlairnddelnkllgnvtiaqggvlpnihq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7k7gD (D:)
msakaekkpaskapaekkpaakktststdgkkrskarketyssyiykvlkqthpdtgisq
ksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavsegtr
avtkyssstqa

    Sequence, based on observed residues (ATOM records):
    >7k7gD (D:)
rketyssyiykvlkqthpdtgisqksmsilnsfvndiferiateasklaaynkkstisar
eiqtavrlilpgelakhavsegtravtkysss

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7k7gE (E:)
martkqtarkstggkaprkqlaskaarksapstggvkkphrykpgtvalreirrfqkste
llirklpfqrlvreiaqdfktdlrfqssaigalqesveaylvslfedtnlaaihakrvti
qkkdiklarrlrgers

    Sequence, based on observed residues (ATOM records):
    >7k7gE (E:)
gtvalreirrfqkstellirklpfqrlvreiaqdfktdlrfqssaigalqesveaylvsl
fedtnlaaihakrvtiqkkdiklarrlrger

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7k7gF (F:)
msgrgkggkglgkggakrhrkilrdniqgitkpairrlarrggvkrisgliyeevravlk
sflesvirdsvtytehakrktvtsldvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records):
    >7k7gF (F:)
rdniqgitkpairrlarrggvkrisgliyeevravlksflesvirdsvtytehakrktvt
sldvvyalkrqgrtlygfgg

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7k7gG (G:)
msggkggkagsaakasqsrsakagltfpvgrvhrllrrgnyaqrigsgapvyltavleyl
aaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnllpk
ksakatkasqel

    Sequence, based on observed residues (ATOM records):
    >7k7gG (G:)
qsrsakagltfpvgrvhrllrrgnyaqrigsgapvyltavleylaaeilelagnaardnk
ktriiprhlqlairnddelnkllgnvtiaqggvlpnihqn

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7k7gH (H:)
msakaekkpaskapaekkpaakktststdgkkrskarketyssyiykvlkqthpdtgisq
ksmsilnsfvndiferiateasklaaynkkstisareiqtavrlilpgelakhavsegtr
avtkyssstqa

    Sequence, based on observed residues (ATOM records):
    >7k7gH (H:)
rketyssyiykvlkqthpdtgisqksmsilnsfvndiferiateasklaaynkkstisar
eiqtavrlilpgelakhavsegtravtkysss

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records:
    >7k7gM (M:)
mfnrttqlkskhpcsvctrrkvkcdrmipcgncrkrgqdsecmkstkl

    Sequence, based on observed residues (ATOM records):
    >7k7gM (M:)
tqlkskhpcsvctrrkvkcdrmipcgncrkrgqdsecmkstkl