PDB entry 7k5q

View 7k5q on RCSB PDB site
Description: bst dna polymerase i time-resolved structure, 8 min post datp addition
Deposited on 2020-09-17, released 2021-03-03
The last revision was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase I
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: polA
    Database cross-references and differences (RAF-indexed):
    • Uniprot E1C9K5 (Start-579)
      • variant (253)
  • Chain 'P':
    Compound: DNA (5'-d(p*g*cp*gp*ap*tp*cp*ap*cp*gp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'T':
    Compound: DNA (5'-d(p*gp*tp*ap*cp*gp*tp*gp*ap*tp*cp*gp*cp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: SO4, DTP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7k5qA (A:)
akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwalerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgeelaeqlrtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
pdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqarlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

    Sequence, based on observed residues (ATOM records):
    >7k5qA (A:)
aftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfva
wlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqy
eavrpdeavygkgakravpdepvlaehlvrkaaaiwalerpfldelrrneqdrllveleq
plssilaemefagvkvdtkrleqmgeelaeqlrtveqriyelagqefninspkqlgvilf
eklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvrpdt
kkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysqiel
rvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygisdy
glaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsr
nfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqarlllqvhdelileapke
emerlcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.