PDB entry 7k3j

View 7k3j on RCSB PDB site
Description: Crystal structure of dLC8 in complex with Panoramix TQT+TQ peptide
Class: motor protein
Keywords: Piwi, transposon silencing, heterochromatin formation, piRNA pathway, transcriptional silencing, RNA BINDING PROTEIN, MOTOR PROTEIN
Deposited on 2020-09-11, released 2021-03-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Dynein light chain 1, cytoplasmic
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: CTP, CDLC1, DDLC1, CG6998
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q24117 (Start-88)
  Domains in SCOPe 2.08: d7k3ja_
• Chain 'B':
  Compound: Protein panoramix
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: Panx, CG9754
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9W2H9 (1-End)
    • expression tag (0)
• Chain 'C':
  Compound: Dynein light chain 1, cytoplasmic
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: CTP, CDLC1, DDLC1, CG6998
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q24117 (Start-88)
  Domains in SCOPe 2.08: d7k3jc_
• Chain 'D':
  Compound: Protein panoramix
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: Panx, CG9754
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9W2H9
• Chain 'E':
  Compound: Dynein light chain 1, cytoplasmic
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: CTP, CDLC1, DDLC1, CG6998
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q24117 (Start-88)
  Domains in SCOPe 2.08: d7k3je_
• Chain 'F':
  Compound: Protein panoramix
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: Panx, CG9754
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9W2H9
• Chain 'G':
  Compound: Dynein light chain 1, cytoplasmic
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: CTP, CDLC1, DDLC1, CG6998
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q24117 (Start-88)
  Domains in SCOPe 2.08: d7k3jg_
• Chain 'H':
  Compound: Protein panoramix
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: Panx, CG9754
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9W2H9 (Start-26)
• Chain 'I':
  Compound: Dynein light chain 1, cytoplasmic
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: CTP, CDLC1, DDLC1, CG6998
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q24117 (Start-88)
  Domains in SCOPe 2.08: d7k3ji_
• Chain 'K':
  Compound: Dynein light chain 1, cytoplasmic
  Species: Drosophila melanogaster [TaxId:7227]
  Gene: CTP, CDLC1, DDLC1, CG6998
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q24117
  Domains in SCOPe 2.08: d7k3jk_
• Heterogens: SO4

PDB Chain Sequences:

• Chain 'A':
  Sequence, based on SEQRES records: (download)
  

  >7k3jA (A:)
  msdrkaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgr
  nfgsyvthetrhfiyfylgqvaillfksg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >7k3jA (A:)
  kaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgrnfgs
  yvthetrhfiyfylgqvaillfksg
  

  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  Sequence, based on SEQRES records: (download)
  

  >7k3jC (C:)
  msdrkaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgr
  nfgsyvthetrhfiyfylgqvaillfksg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >7k3jC (C:)
  kaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgrnfgs
  yvthetrhfiyfylgqvaillfksg
  

  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  Sequence, based on SEQRES records: (download)
  

  >7k3jE (E:)
  msdrkaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgr
  nfgsyvthetrhfiyfylgqvaillfksg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >7k3jE (E:)
  kaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgrnfgs
  yvthetrhfiyfylgqvaillfksg
  

  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  Sequence, based on SEQRES records: (download)
  

  >7k3jG (G:)
  msdrkaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgr
  nfgsyvthetrhfiyfylgqvaillfksg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >7k3jG (G:)
  kaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgrnfgs
  yvthetrhfiyfylgqvaillfksg
  

  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  Sequence, based on SEQRES records: (download)
  

  >7k3jI (I:)
  msdrkaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgr
  nfgsyvthetrhfiyfylgqvaillfksg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >7k3jI (I:)
  kaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgrnfgs
  yvthetrhfiyfylgqvaillfksg
  

  
  
• Chain 'K':
  Sequence, based on SEQRES records: (download)
  

  >7k3jK (K:)
  msdrkaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgr
  nfgsyvthetrhfiyfylgqvaillfksg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >7k3jK (K:)
  kaviknadmseemqqdavdcatqalekyniekdiaayikkefdkkynptwhcivgrnfgs
  yvthetrhfiyfylgqvaillfks