PDB entry 7k1s

View 7k1s on RCSB PDB site
Description: the n-terminus of varicella-zoster virus glycoprotein b has a functional role in fusion.
Deposited on 2020-09-08, released 2021-01-20
The last revision was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope glycoprotein B
    Species: Human herpesvirus 3 [TaxId:10335]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Envelope glycoprotein B
    Species: Human herpesvirus 3 [TaxId:10335]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Envelope glycoprotein B
    Species: Human herpesvirus 3 [TaxId:10335]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7k1sA (A:)
mspcgyyskwrnrdrpeyrrnlrfrrffssihpnaaagsgfngpgvfitsvtgvwlcflc
ifsmfvtavvsvspssfyeslqveptqseditrsahlgdgdeireaihksqdaetkptfy
vcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdvivstaw
agssytqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedknpqdmpl
iaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfglstgdi
iymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtphltvgwn
wkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihlsqcvke
earaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnslarlylqelvrentnh
spqkhptrntrsrrsvpvelranrtitttssvefamlqftydhiqehvnemlarissswc
qlqnreralwsglfpinpsalastildqrvkarilgdvisvsncpelgsdtriilqnsmr
vsgsttrcysrplisivslngsgtvegqlgtdnelimsrdllepcvanhkryflfghhyv
yyedyryvreiavhdvgmistyvdlnltllkdrefmplqvytrdelrdtglldyseiqrr
nqmhslrfydidkvvqydsgtaimqgmaqffqglgtagqavghvvlgatgallstvhgft
tflsnpfgalavgllvlaglvaaffayryvlklktspmkalyplttkglkqlpegmdpfa
ekpnatdtpieeigdsqntepsvnsgfdpdkfreaqemikymtlvsaaerqeskarkknk
tsalltsrltglalrnrrgysrvrtenvtgv

    Sequence, based on observed residues (ATOM records):
    >7k1sA (A:)
tkptfyvcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdv
ivstawagssytqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedkn
pqdmpliaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfg
lstgdiiymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtph
ltvgwnwkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihl
sqcvkeearaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnsnrtitttssv
efamlqftydhiqehvnemlarissswcqlqnreralwsglfpinpsalastildqrvka
rilgdvisvsncpelgsdtriilqnsmrvsgsttrcysrplisivslngsgtvegqlgtd
nelimsrdllepcvanhkryflfghhyvyyedyryvreiavhdvgmistyvdlnltllkd
refmplqvytrdelrdtglldyseiqrrnqmhslrfydidkvvq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7k1sB (B:)
mspcgyyskwrnrdrpeyrrnlrfrrffssihpnaaagsgfngpgvfitsvtgvwlcflc
ifsmfvtavvsvspssfyeslqveptqseditrsahlgdgdeireaihksqdaetkptfy
vcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdvivstaw
agssytqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedknpqdmpl
iaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfglstgdi
iymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtphltvgwn
wkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihlsqcvke
earaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnslarlylqelvrentnh
spqkhptrntrsrrsvpvelranrtitttssvefamlqftydhiqehvnemlarissswc
qlqnreralwsglfpinpsalastildqrvkarilgdvisvsncpelgsdtriilqnsmr
vsgsttrcysrplisivslngsgtvegqlgtdnelimsrdllepcvanhkryflfghhyv
yyedyryvreiavhdvgmistyvdlnltllkdrefmplqvytrdelrdtglldyseiqrr
nqmhslrfydidkvvqydsgtaimqgmaqffqglgtagqavghvvlgatgallstvhgft
tflsnpfgalavgllvlaglvaaffayryvlklktspmkalyplttkglkqlpegmdpfa
ekpnatdtpieeigdsqntepsvnsgfdpdkfreaqemikymtlvsaaerqeskarkknk
tsalltsrltglalrnrrgysrvrtenvtgv

    Sequence, based on observed residues (ATOM records):
    >7k1sB (B:)
tkptfyvcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdv
ivstawagssytqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedkn
pqdmpliaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfg
lstgdiiymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtph
ltvgwnwkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihl
sqcvkeearaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnsnrtitttssv
efamlqftydhiqehvnemlarissswcqlqnreralwsglfpinpsalastildqrvka
rilgdvisvsncpelgsdtriilqnsmrvsgsttrcysrplisivslngsgtvegqlgtd
nelimsrdllepcvanhkryflfghhyvyyedyryvreiavhdvgmistyvdlnltllkd
refmplqvytrdelrdtglldyseiqrrnqmhslrfydidkvvq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7k1sC (C:)
mspcgyyskwrnrdrpeyrrnlrfrrffssihpnaaagsgfngpgvfitsvtgvwlcflc
ifsmfvtavvsvspssfyeslqveptqseditrsahlgdgdeireaihksqdaetkptfy
vcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdvivstaw
agssytqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedknpqdmpl
iaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfglstgdi
iymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtphltvgwn
wkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihlsqcvke
earaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnslarlylqelvrentnh
spqkhptrntrsrrsvpvelranrtitttssvefamlqftydhiqehvnemlarissswc
qlqnreralwsglfpinpsalastildqrvkarilgdvisvsncpelgsdtriilqnsmr
vsgsttrcysrplisivslngsgtvegqlgtdnelimsrdllepcvanhkryflfghhyv
yyedyryvreiavhdvgmistyvdlnltllkdrefmplqvytrdelrdtglldyseiqrr
nqmhslrfydidkvvqydsgtaimqgmaqffqglgtagqavghvvlgatgallstvhgft
tflsnpfgalavgllvlaglvaaffayryvlklktspmkalyplttkglkqlpegmdpfa
ekpnatdtpieeigdsqntepsvnsgfdpdkfreaqemikymtlvsaaerqeskarkknk
tsalltsrltglalrnrrgysrvrtenvtgv

    Sequence, based on observed residues (ATOM records):
    >7k1sC (C:)
tkptfyvcppptgstivrlepprtcpdyhlgknftegiavvykeniaaykfkatvyykdv
ivstawagssytqitnryadrvpipvseitdtidkfgkcsskatyvrnnhkveafnedkn
pqdmpliaskynsvgskawhttndtymvagtpgtyrtgtsvnciieevearsifpydsfg
lstgdiiymspffglrdgayrehsnyamdrfhqfegyrqrdldtrallepaarnflvtph
ltvgwnwkpkrtevcslvkwrevedvvrdeyahnfrftmktlsttfisetnefnlnqihl
sqcvkeearaiinriyttrynsshvrtgdiqtylarggfvvvfqpllsnsnrtitttssv
efamlqftydhiqehvnemlarissswcqlqnreralwsglfpinpsalastildqrvka
rilgdvisvsncpelgsdtriilqnsmrvsgsttrcysrplisivslngsgtvegqlgtd
nelimsrdllepcvanhkryflfghhyvyyedyryvreiavhdvgmistyvdlnltllkd
refmplqvytrdelrdtglldyseiqrrnqmhslrfydidkvvq