PDB entry 7k19

View 7k19 on RCSB PDB site
Description: cryoem structure of dna-pk catalytic subunit complexed with dna (complex i)
Deposited on 2020-09-07, released 2021-01-06
The last revision was dated 2021-03-03, with a file datestamp of 2021-02-26.
Experiment type: EM
Resolution: 4.3 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-dependent Protein Kinase Catalytic Subunit
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA (5'-d(*gp*cp*ap*tp*gp*cp*tp*cp*tp*ap*cp*tp*gp*cp*tp*tp*cp*gp*ap*tp*ap*tp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*gp*cp*ap*tp*gp*cp*tp*cp*tp*ap*cp*tp*gp*cp*tp*tp*cp*gp*ap*tp*ap*tp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(*ap*ap*gp*cp*ap*gp*tp*ap*gp*ap*gp*cp*ap*tp*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7k19A (A:)
    magsgagvrcsllrlqetlsaadrcgaalaghqlirglgqecvlssspavlalqtslvfs
    rdfgllvfvrkslnsiefrecreeilkflciflekmgqkiapysveikntctsvytkdra
    akckipaldllikllqtfrssrlmdefkigelfskfygelalkkkipdtvlekvyellgl
    lgevhpseminnaenlfraflgelktqmtsavrepklpvlagclkglssllcnftksmee
    dpqtsreifnfvlkairpqidlkryavpsaglrlfalhasqfstclldnyvslfevllkw
    cahtnvelkkaalsalesflkqvsnmvaknaemhknklqyfmeqfygiirnvdsnnkels
    iairgyglfagpckvinakdvdfmyveliqrckqmfltqtdtgddrvyqmpsflqsvasv
    llyldtvpevytpvlehlvvmqidsfpqyspkmqlvccraivkvflalaakgpvlrncis
    tvvhqgliricskpvvlpkgpesesedhrasgevrtgkwkvptykdyvdlfrhllssdqm
    mdsiladeaffsvnssseslnhllydefvksvlkivekldltleiqtvgeqengdeapgv
    wmiptsdpaanlhpakpkdfsafinlvefcreilpekqaeffepwvysfsyelilqstrl
    plisgfykllsitvrnakkikyfegvspkslkhspedpekyscfalfvkfgkevavkmkq
    ykdellascltfllslphniieldvrayvpalqmafklglsytplaevglnaleewsiyi
    drhvmqpyykdilpcldgylktsalsdetknnwevsalsraaqkgfnkvvlkhlkktknl
    ssneaisleeirirvvqmlgslggqinknlltvtssdemmksyvawdrekrlsfavpfre
    mkpvifldvflprvtelaltasdrqtkvaacellhsmvmfmlgkatqmpeggqgappmyq
    lykrtfpvllrlacdvdqvtrqlyeplvmqlihwftnnkkfesqdtvalleaildgivdp
    vdstlrdfcgrcireflkwsikqitpqqqekspvntkslfkrlyslalhpnafkrlgasl
    afnniyrefreeeslveqfvfealviymeslalahadekslgtiqqccdaidhlcriiek
    khvslnkakkrrlprgfppsaslclldlvkwllahcgrpqtecrhksielfykfvpllpg
    nrspnlwlkdvlkeegvsflintfegggcgqpsgilaqptllylrgpfslqatlcwldll
    laalecyntfigertvgalqvlgteaqssllkavafflesiamhdiiaaekcfgtgaagn
    rtspqegerynyskctvvvrimeftttllntspegwkllkkdlcnthlmrvlvqtlcepa
    sigfnigdvqvmahlpdvcvnlmkalkmspykdilethlrekitaqsieelcavnlygpd
    aqvdrsrlaavvsackqlhragllhnilpsqstdlhhsvgtellslvykgiapgderqcl
    psldlsckqlasgllelafafgglcerlvslllnpavlstaslgssqgsvihfshgeyfy
    slfsetintellknldlavlelmqssvdntkmvsavlngmldqsfreranqkhqglklat
    tilqhwkkcdswwakdspletkmavlallakilqidssvsfntshgsfpevfttyislla
    dtkldlhlkgqavtllpfftsltggsleelrrvleqlivahfpmqsrefppgtprfnnyv
    dcmkkfldalelsqspmllelmtevlcreqqhvmeelfqssfrriarrgscvtqvglles
    vyemfrkddprlsftrqsfvdrslltllwhcsldalreffstivvdaidvlksrftklne
    stfdtqitkkmgyykildvmysrlpkddvhakeskinqvfhgscitegneltktliklcy
    daftenmagenqllerrrlyhcaayncaisviccvfnelkfyqgflfsekpeknllifen
    lidlkrrynfpvevevpmerkkkyieirkeareaangdsdgpsymsslsyladstlseem
    sqfdfstgvqsysyssqdprpatgrfrrreqrdptvhddvlelemdelnrhecmapltal
    vkhmhrslgppqgeedsvprdlpswmkflhgklgnpivplnirlflaklvinteevfrpy
    akhwlspllqlaasennggegihymvveivatilswtglatptgvpkdevlanrllnflm
    khvfhpkravfrhnleiiktlvecwkdclsipyrlifekfsgkdpnskdnsvgiqllgiv
    mandlppydpqcgiqsseyfqalvnnmsfvrykevyaaaaevlglilryvmerknilees
    lcelvakqlkqhqntmedkfivclnkvtksfppladrfmnavffllpkfhgvlktlclev
    vlcrvegmtelyfqlkskdfvqvmrhrdderqkvcldiiykmmpklkpvelrellnpvve
    fvshpsttcreqmynilmwihdnyrdpesetdndsqeifklakdvliqglidenpglqli
    irnfwshetrlpsntldrllalnslyspkievhflslatnfllemtsmspdypnpmfehp
    lsecefqeytidsdwrfrstvltpmfvetqasqgtlqtrtqegslsarwpvagqiratqq
    qhdftltqtadgrssfdwltgsstdplvdhtspssdsllfahkrserlqraplksvgpdf
    gkkrlglpgdevdnkvkgaagrtdllrlrrrfmrdqeklslmyarkgvaeqkrekeikse
    lkmkqdaqvvlyrsyrhgdlpdiqikhsslitplqavaqrdpiiakqlfsslfsgilkem
    dkfktlseknnitqkllqdfnrflnttfsffppfvsciqdiscqhaallsldpaavsagc
    laslqqpvgirlleeallrllpaelpakrvrgkarlppdvlrwvelaklyrsigeydvlr
    giftseigtkqitqsallaearsdyseaakqydealnkqdwvdgepteaekdfwelasld
    cynhlaewksleycstasidsenppdlnkiwsepfyqetylpymirsklklllqgeadqs
    lltfidkamhgelqkailelhysqelsllyllqddvdrakyyiqngiqsfmqnyssidvl
    lhqsrltklqsvqalteiqefisfiskqgnlssqvplkrllntwtnrypdakmdpmniwd
    diitnrcfflskieekltplpednsmnvdqdgdpsdrmevqeqeedisslirsckfsmkm
    kmidsarkqnnfslamkllkelhkesktrddwlvswvqsycrlshcrsrsqgcseqvltv
    lktvslldennvssylsknilafrdqnillgttyriianalssepaclaeieedkarril
    elsgsssedsekviaglyqrafqhlseavqaaeeeaqppswscgpaagvidaymtladfc
    dqqlrkeeenasvidsaelqaypalvvekmlkalklnsnearlkfprllqiierypeetl
    slmtkeissvpcwqfiswishmvalldkdqavavqhsveeitdnypqaivypfiissesy
    sfkdtstghknkefvarikskldqggviqdfinaldqlsnpellfkdwsndvraelaktp
    vnkkniekmyermyaalgdpkapglgafrrkfiqtfgkefdkhfgkggskllrmklsdfn
    ditnmlllkmnkdskppgnlkecspwmsdfkveflrneleipgqydgrgkplpeyhvria
    gfdervtvmaslrrpkriiirghderehpflvkggedlrqdqrveqlfqvmngilaqdsa
    csqralqlrtysvvpmtsrlgliewlentvtlkdlllntmsqeekaaylsdprappceyk
    dwltkmsgkhdvgaymlmykganrtetvtsfrkreskvpadllkrafvrmstspeaflal
    rshfasshalicishwilgigdrhlnnfmvametggvigidfghafgsatqflpvpelmp
    frltrqfinlmlpmketglmysimvhalrafrsdpglltntmdvfvkepsfdwknfeqkm
    lkkggswiqeinvaeknwyprqkicyakrklaganpavitcdelllghekapafrdyvav
    argskdhniraqepesglseetqvkclmdqatdpnilgrtwegwepwm
    

    Sequence, based on observed residues (ATOM records):
    >7k19A (A:)
    vrcsllrlqetlsaadrcgaalaghqlirglgqecvlssspavlalqtslvfsrdfgllv
    fvrkslnsiefrecreeilkflciflekmgqkiapysveikntctsvytkdraakckipa
    ldllikllqtfrssrlmdefkigelfskfygelalkkkipdtvlekvyellgllgevhps
    eminnaenlfraflgelktqmtsavrepklpvlagclkglssllcnftksmeedpqtsre
    ifnfvlkairpqidlkryavpsaglrlfalhasqfstclldnyvslfevllkwcahtnve
    lkkaalsalesflkqvsnmvaknaemhknklqyfmeqfygiirnvdsnnkelsiairgyg
    lfagpckvinakdvdfmyveliqrckqmfltqtdtgddrvyqmpsflqsvasvllyldtv
    pevytpvlehlvvmqidsfpqyspkmqlvccraivkvflalaakgpvlrncistvvhqgl
    iricskpvkvptykdyvdlfrhllssdqmmdsilaslnhllydefvksvlkivekldltl
    eiqtmiptsdpaanlhpakpkdfsafinlvefcreilpekqaeffepwvysfsyelilqs
    trlplisgfykllsitvrnakkikyfegkyscfalfvkfgkevavkmkqykdellasclt
    fllslphniieldvrayvpalqmafklglsytplaevglnaleewsiyidrhvmqpyykd
    ilpcldgylkisleeirirvvqmlgslggqinknlltvtssdemmksyvawdrekrlsfa
    vpfremkpvifldvflprvtelaltasdrqtkvaacellhsmvmfmlgkatqppmyqlyk
    rtfpvllrlacdvdqvtrqlyeplvmqlihwftnnkkfesqdtvalleaildgivdpvds
    tlrdfcgrcireflkwsikqitpqqqekspvntkslfkrlyslalhpnafkrlgaslafn
    niyrefreeeslveqfvfealviymeslalahadekslgtiqqccdaidhlcriiekkhv
    slnkakkrrlprgfppsaslclldlvkwllahcgrpqtecrhksielfykfvpllpgnrs
    pnlwlkdvlkeegvsflintfegggcgllylrgpfslqatlcwldlllaalecyntfige
    rtvgalqvlgssllkavafflesiamspqegerynyskctvvvrimeftttllntspegw
    kllkkdlcnthlmrvlvqtlcepasigfnigdvqvmahlpdvcvnlmkalkmspykdile
    thlrekitaqsieelcavnlygpdaqvdrsrlaavvsackqlhragllhnilpsqstdlh
    hsvgtellslvykgiapqclpsldlsckqlasgllelafafgglcerlvslllnpavlst
    ageyfyslfsetintellknldlavlelmqssvdntkmvsavlngmldqsfreranqkhq
    glklattilqhwkkcdswwakdspletkmavlallakilqidssvsfntshgsfpevftt
    yislladtkldlhlkgqavtllpfftsltggsleelrrvleqlivahfpmqsrefppgtp
    rfnnyvdcmkkfldalelsqspmllelmtevlcreqqhvmeelfqssfrriarrgscvtq
    vgllesvyemfrkddprlsftrqsfvdrslltllwhcsldalreffstivvdaidvlksr
    ftklnestfdtqitkkmgyykildvmysrlpkddvhakeskinqvfhgscitegneltkt
    liklcydaftenmagenqllerrrlyhcaayncaisviccvfnelkfyqgflfsekpekn
    llifenlidlkrrynfpvevstlseemsqfdfselnrhecmapltalvkhmhrslrdlps
    wmkflhgklgnpivplnirlflaklvinteevfrpyakhwlspllqlaasennggegihy
    mvveivatilswtglatptgvpkdevlanrllnflmkhvfhpkravfrhnleiiktlvec
    wkdclsipyrlifekfsgkdpnskdnsvgiqllgivmandlppydpqcgiqsseyfqalv
    nnmsfvrykevyaaaaevlglilryvmerknileeslcelvakqlkqhqntmedkfivcl
    nkvtksfppladrfmnavffllpkfhgvlktlclevvlcrvegmtelyfqlkskdfvqvm
    rhrdderqkvcldiiykmmpklkpvelrellnpvvefvshpsttcreqmynilmwihdny
    rdpesetdndsqeifklakdvliqglidenpglqliirnfwshetrlpsntldrllalns
    lyspkievhflslatnfllemtshsslitplqavaqrdpiiakqlfsslfsgilkemdkf
    ktlseknnitqkllqdfnrflnttfsffppfvsciqdiscqhaallsldpaavsagclas
    lqqpvgirlleeallrdvlrwvelaklyrsigeydvlrgiftseigtkqitqsallaear
    sdyseaakqydealnkqdwvdgepteaekdfwelasldcynhlaewksleycstasidse
    nppdlnkiwsepfyqetylpymirsklklllqgeadqslltfidkamhgelqkailelhy
    sqelsllyllqddvdrakyyiqngiqsfmqnyssidvllhqsrltklqsvqalteiqefi
    sfiskqgnlssqvplkrllntwtnrypdakmdpmniwddiitnrcfflskieekltdiss
    lirsckfsmkmkmidsarkqnnfslamkllkelhkesktrddwlvswvqsycrlshcrsr
    sqgcseqvltvlktvslldennvssylsknilafrdqnillgttyriianalssepacla
    eieedkarrileldsekviaglyqrafqhlseavqaaagvidaymtladfcdqqlrkeee
    qaypalvvekmlkalklnsnearlkfprllqiierypeetlslmtkeissvpcwqfiswi
    shmvalldkdqavavqhsveeitdnypqaivypfiissesysfkdtstghknkefvarik
    skldqggviqdfinaldqlsnpellfkdwsndvraelaktpvnkkniekmyermyaalgd
    pkapglgafrrkfiqtfgkefdkhfgkggskllrmklsdfnditnmlllkmnkdskppgn
    lkecspwmsdfkveflrneleipgqydgrgkplpeyhvriagfdervtvmaslrrpkrii
    irghderehpflvkggedlrqdqrveqlfqvmngilaqdsacsqralqlrtysvvpmtsr
    lgliewlentvtlkdlllntmsqeekaaylsdprappceykdwltkmsgkhdvgaymlmy
    kganrtetvtsfrkreskvpadllkrafvrmstspeaflalrshfasshalicishwilg
    igdrhlnnfmvametggvigidfghafgsatqflpvpelmpfrltrqfinlmlpmketgl
    mysimvhalrafrsdpglltntmdvfvkepsfdwknfeqkmlkkggswiqeinvaeknwy
    prqkicyakrklaganpavitcdelllghekapafrdyvavargskdhniraqepesgls
    eetqvkclmdqatdpnilgrtwegwepwm
    

  • Chain 'D':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.