PDB entry 7k0f

View 7k0f on RCSB PDB site
Description: 1.65 A resolution structure of SARS-CoV-2 3CL protease in complex with a deuterated GC376 alpha-ketoamide analog (compound 5)
Class: hydrolase
Keywords: COVID-19, PROTEASE, severe acute respiratory syndrome coronavirus 2, SARS-CoV-2 3CL protease Inhhibitors, hydrolase, deuterated hydrolase inhibitor
Deposited on 2020-09-04, released 2021-01-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-14, with a file datestamp of 2021-07-09.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3C-like proteinase
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1 (4-308)
      • expression tag (0-3)
    Domains in SCOPe 2.08: d7k0fa_
  • Chain 'B':
    Compound: 3C-like proteinase
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1 (4-308)
      • expression tag (0-3)
    Domains in SCOPe 2.08: d7k0fb_
  • Heterogens: VR4, PG4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7k0fA (A:)
snigsgfrkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyed
llirksnhnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvla
cyngspsgvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtd
legnfygpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamk
ynyepltqdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdv
vrqcsgvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >7k0fA (A:)
rkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyedllirksn
hnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvlacyngsps
gvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtdlegnfyg
pfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamkynyeplt
qdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdvvrqc

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7k0fB (B:)
snigsgfrkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyed
llirksnhnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvla
cyngspsgvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtd
legnfygpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamk
ynyepltqdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdv
vrqcsgvtf

    Sequence, based on observed residues (ATOM records): (download) 
    >7k0fB (B:)
frkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyedllirks
nhnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvlacyngsp
sgvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtdlegnfy
gpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamkynyepl
tqdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdvvrqcs