PDB entry 7jy8

View 7jy8 on RCSB PDB site
Description: analysis of a strand exchange reaction with a mini filament of 9-reca, 27-mer ssdna, partially-homologous 67 bp dsdna and atpgammas
Deposited on 2020-08-29, released 2020-11-04
The last revision was dated 2020-11-11, with a file datestamp of 2020-11-06.
Experiment type: EM
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Protein recA
    Species: Escherichia coli [TaxId:562]
    Gene: recA, NCTC11341_01072
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: DNA (27-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'T':
    Compound: DNA (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3')
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: MG, AGS

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jy8A (A:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8A (A:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7jy8B (B:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8B (B:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7jy8C (C:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8C (C:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7jy8D (D:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8D (D:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7jy8E (E:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8E (E:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7jy8F (F:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8F (F:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7jy8G (G:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8G (G:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7jy8H (H:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8H (H:)
aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgr
iveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpd
tgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklag
nlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvgs
etrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigq
gkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'I':
    Sequence, based on SEQRES records:
    >7jy8I (I:)
maidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmg
riveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqp
dtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrkla
gnlkqsntllifinqirmkigvmfgnpetttggnalkfyasvrldirrigavkegenvvg
setrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekig
qgkanatawlkdnpetakeiekkvrelllsnpns

    Sequence, based on observed residues (ATOM records):
    >7jy8I (I:)
smdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafi
daehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpka
eiegeigdshmglaarmmsqamrklagnlkqsntllifinqirmkigvmfgnpetttggn
alkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfyge
lvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpns

  • Chain 'S':
    No sequence available.

  • Chain 'T':
    No sequence available.