PDB entry 7jx9

View 7jx9 on RCSB PDB site
Description: The crystal structure of human ornithine aminotransferase with an intermediate bound during inactivation by (1S,3S)-3-amino-4-(hexafluoropropan-2-ylidenyl)-cyclopentane-1-carboxylic acid.
Class: TRANSFERASE/TRANSFERASE inhibitor
Keywords: ornithine, aminotransferase, PLP, mechanism-based inactivator, intermediate, irreversible inhibitor, TRANSFERASE, TRANSFERASE-TRANSFERASE inhibitor complex
Deposited on 2020-08-26, released 2021-01-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 1.96 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ornithine aminotransferase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: OAT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7jx9a_
  • Chain 'B':
    Compound: Ornithine aminotransferase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: OAT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7jx9b_
  • Chain 'C':
    Compound: Ornithine aminotransferase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: OAT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7jx9c_
  • Heterogens: IF1, VLS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7jx9A (A:)
gpptsddifereykygahnyhplpvalergkgiylwdvegrkyfdflssysavnqghchp
kivnalksqvdkltltsrafynnvlgeyeeyitklfnyhkvlpmntgveagetacklark
wgytvkgiqkykakivfaagnfwgrtlsaissstdptsydgfgpfmpgfdiipyndlpal
eralqdpnvaafmvepiqgeagvvvpdpgylmgvrelctrhqvlfiadeiqtglartgrw
lavdyenvrpdivllgkalsgglypvsavlcdddimltikpgehgstyggnplgcrvaia
alevleeenlaenadklgiilrnelmklpsdvvtavrgkgllnaiviketkdwdawkvcl
rlrdngllakpthgdiirfapplvikedelresieiinktilsf

    Sequence, based on observed residues (ATOM records): (download) 
    >7jx9A (A:)
ptsddifereykygahnyhplpvalergkgiylwdvegrkyfdflssysavnqghchpki
vnalksqvdkltltsrafynnvlgeyeeyitklfnyhkvlpmntgveagetacklarkwg
ytvkgiqkykakivfaagnfwgrtlsaissstdptsydgfgpfmpgfdiipyndlpaler
alqdpnvaafmvepiqgeagvvvpdpgylmgvrelctrhqvlfiadeiqtglartgrwla
vdyenvrpdivllgkalsgglypvsavlcdddimltikpgehgstyggnplgcrvaiaal
evleeenlaenadklgiilrnelmklpsdvvtavrgkgllnaiviketkdwdawkvclrl
rdngllakpthgdiirfapplvikedelresieiinktilsf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7jx9B (B:)
gpptsddifereykygahnyhplpvalergkgiylwdvegrkyfdflssysavnqghchp
kivnalksqvdkltltsrafynnvlgeyeeyitklfnyhkvlpmntgveagetacklark
wgytvkgiqkykakivfaagnfwgrtlsaissstdptsydgfgpfmpgfdiipyndlpal
eralqdpnvaafmvepiqgeagvvvpdpgylmgvrelctrhqvlfiadeiqtglartgrw
lavdyenvrpdivllgkalsgglypvsavlcdddimltikpgehgstyggnplgcrvaia
alevleeenlaenadklgiilrnelmklpsdvvtavrgkgllnaiviketkdwdawkvcl
rlrdngllakpthgdiirfapplvikedelresieiinktilsf

    Sequence, based on observed residues (ATOM records): (download) 
    >7jx9B (B:)
ptsddifereykygahnyhplpvalergkgiylwdvegrkyfdflssysavnqghchpki
vnalksqvdkltltsrafynnvlgeyeeyitklfnyhkvlpmntgveagetacklarkwg
ytvkgiqkykakivfaagnfwgrtlsaissstdptsydgfgpfmpgfdiipyndlpaler
alqdpnvaafmvepiqgeagvvvpdpgylmgvrelctrhqvlfiadeiqtglartgrwla
vdyenvrpdivllgkalsgglypvsavlcdddimltikpgehgstyggnplgcrvaiaal
evleeenlaenadklgiilrnelmklpsdvvtavrgkgllnaiviketkdwdawkvclrl
rdngllakpthgdiirfapplvikedelresieiinktilsf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7jx9C (C:)
gpptsddifereykygahnyhplpvalergkgiylwdvegrkyfdflssysavnqghchp
kivnalksqvdkltltsrafynnvlgeyeeyitklfnyhkvlpmntgveagetacklark
wgytvkgiqkykakivfaagnfwgrtlsaissstdptsydgfgpfmpgfdiipyndlpal
eralqdpnvaafmvepiqgeagvvvpdpgylmgvrelctrhqvlfiadeiqtglartgrw
lavdyenvrpdivllgkalsgglypvsavlcdddimltikpgehgstyggnplgcrvaia
alevleeenlaenadklgiilrnelmklpsdvvtavrgkgllnaiviketkdwdawkvcl
rlrdngllakpthgdiirfapplvikedelresieiinktilsf

    Sequence, based on observed residues (ATOM records): (download) 
    >7jx9C (C:)
ptsddifereykygahnyhplpvalergkgiylwdvegrkyfdflssysavnqghchpki
vnalksqvdkltltsrafynnvlgeyeeyitklfnyhkvlpmntgveagetacklarkwg
ytvkgiqkykakivfaagnfwgrtlsaissstdptsydgfgpfmpgfdiipyndlpaler
alqdpnvaafmvepiqgeagvvvpdpgylmgvrelctrhqvlfiadeiqtglartgrwla
vdyenvrpdivllgkalsgglypvsavlcdddimltikpgehgstyggnplgcrvaiaal
evleeenlaenadklgiilrnelmklpsdvvtavrgkgllnaiviketkdwdawkvclrl
rdngllakpthgdiirfapplvikedelresieiinktilsf