PDB entry 7jvd

View 7jvd on RCSB PDB site
Description: Fab of 5.6 monoclonal mouse IgG1 co-crystallized with the trisaccharide form of serotype 3 pneumococcal capsular polysaccharide
Class: immune system
Keywords: Streptococcus pneumoniae type 3, capsular polysaccharide, trisaccharide, Fab, IMMUNE SYSTEM
Deposited on 2020-08-20, released 2021-06-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: 5.6 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JVD (0-219)
    Domains in SCOPe 2.08: d7jvdh_
  • Chain 'L':
    Compound: 5.6 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JVD (0-215)
    Domains in SCOPe 2.08: d7jvdl1, d7jvdl2
  • Heterogens: BGC, BDP, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7jvdH (H:)
evklvesggglvkpggslklscaasgftfsnyamswvrqtpekrlewvasiiiggntyyp
dsvkgrftisrdnarnilylqmsslrsedtamyyctrrvvvtkggamdywgqgtsvtvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records): (download) 
    >7jvdH (H:)
evklvesggglvkpggslklscaasgftfsnyamswvrqtpekrlewvasiiiggntyyp
dsvkgrftisrdnarnilylqmsslrsedtamyyctrrvvvtkggamdywgqgtsvtvss
akttppsvyplapnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsstwpsetvtcnvahpasstkvdkkivpr

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7jvdL (L:)
rgqivltqspaimsaspgekvtmtcsasssvsymywyqqkpgssprlliydtsnlasgvp
vrfsgsgsgtsysltisrmeaedaatyycqqwstypftfgsgtkleikradaaptvsifp
psseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstl
tltkdeyerhnsytceathktstspivksfnrngec

    Sequence, based on observed residues (ATOM records): (download) 
    >7jvdL (L:)
qivltqspaimsaspgekvtmtcsasssvsymywyqqkpgssprlliydtsnlasgvpvr
fsgsgsgtsysltisrmeaedaatyycqqwstypftfgsgtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrng