PDB entry 7jva

View 7jva on RCSB PDB site
Description: sars-cov-2 spike in complex with the s2a4 neutralizing antibody fab fragment (local refinement of the receptor-binding domain and fab variable domains)
Deposited on 2020-08-20, released 2020-10-14
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: S2A4 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JVA (0-End)
  • Chain 'L':
    Compound: S2A4 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JVA (0-End)
  • Heterogens: BMA, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jvaA (A:)
mgilpspgmpallslvsllsvllmgcvaetgtqcvnlttrtqlppaytnsftrgvyypdk
vfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksnii
rgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvys
sannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfs
aleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkyne
ngtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgev
fnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfv
irgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnl
kpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhap
atvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqt
leilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsn
vfqtragcligaehvnnsyecdipigagicasyqtqtnspsgagsvasqsiiaytmslga
ensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfct
qlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedl
lfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagt
itsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsst
asalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrl
qslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvv
flhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntf
vsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqk
eidrlnevaknlneslidlqelgkyeqyikgsgrenlyfqggggsgyipeaprdgqayvr
kdgewvllstflghhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >7jvaA (A:)
tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcf
tnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyl
yrlfrksnlkpferdisteiyqagstpcngvfncyfplqsygfqptngvgyqpyrvvvls
fellhapatvcgp

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7jvaH (H:)
evqlvesggglvqpggslrlscaasgftfssywmnwvrqapgkglewvanikqdgsekyy
vdsvkgrftisrdnaknslflqmnslraedtavyycarvwwlrgsfdywgqgtlvtvss

    Sequence, based on observed residues (ATOM records):
    >7jvaH (H:)
evqlvesggglvqpggslrlscaasgftfssywmnwvrqapgkglewvanikqdgsekyy
vdsvkgrftisrdnaknslflqmnslraedtavyycarvwwlrgsfdywgqgtlvtv

  • Chain 'L':
    Sequence, based on SEQRES records:
    >7jvaL (L:)
nfmltqphsvsespgktvtisctgssgsiasnyvqwyqqrpgsapttviyednqrpsgvp
drfsgsidsssnsasltisglktedeadyycqsydssnhvvfgggtkltvl

    Sequence, based on observed residues (ATOM records):
    >7jvaL (L:)
nfmltqphsvsespgktvtisctgssgsiasnyvqwyqqrpgsapttviyednqrpsgvp
drfsgsidsssnsasltisglktedeadyycqsydssnhvvfgggtkltv