PDB entry 7jsl

View 7jsl on RCSB PDB site
Description: crystal structure of the dna binding domain of human transcription factor erf in the oxidized form, in complex with double-stranded dna accggaagtg
Deposited on 2020-08-14, released 2020-11-25
The last revision was dated 2020-11-25, with a file datestamp of 2020-11-20.
Experiment type: XRAY
Resolution: 4.51 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (5'-d(*ap*cp*cp*gp*gp*ap*ap*gp*tp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'B':
    Compound: DNA (5'-d(*ap*cp*cp*gp*gp*ap*ap*gp*tp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA (5'-d(*cp*ap*cp*tp*tp*cp*cp*gp*gp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*cp*ap*cp*tp*tp*cp*cp*gp*gp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: ETS domain-containing transcription factor ERF
    Species: Homo sapiens [TaxId:9606]
    Gene: ERF
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: DNA (5'-d(*ap*cp*cp*gp*gp*ap*ap*gp*tp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(*cp*ap*cp*tp*tp*cp*cp*gp*gp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: ETS domain-containing transcription factor ERF
    Species: Homo sapiens [TaxId:9606]
    Gene: ERF
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (5'-d(*ap*cp*cp*gp*gp*ap*ap*gp*tp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'J':
    Compound: ETS domain-containing transcription factor ERF
    Species: Homo sapiens [TaxId:9606]
    Gene: ERF
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: DNA (5'-d(*cp*ap*cp*tp*tp*cp*cp*gp*gp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'L':
    Compound: ETS domain-containing transcription factor ERF
    Species: Homo sapiens [TaxId:9606]
    Gene: ERF
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7jslE (E:)
gphmpgsrqiqlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmn
ydklsralryyynkrilhktkgkrftykfnfnklvlvnypfidvglaggavpqsappvps
ggs

    Sequence, based on observed residues (ATOM records):
    >7jslE (E:)
qlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmnydklsralry
yynkrilhktkgkrftykfnfn

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7jslH (H:)
gphmpgsrqiqlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmn
ydklsralryyynkrilhktkgkrftykfnfnklvlvnypfidvglaggavpqsappvps
ggs

    Sequence, based on observed residues (ATOM records):
    >7jslH (H:)
iqlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmnydklsralr
yyynkrilhktkgkrftykfnfn

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records:
    >7jslJ (J:)
gphmpgsrqiqlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmn
ydklsralryyynkrilhktkgkrftykfnfnklvlvnypfidvglaggavpqsappvps
ggs

    Sequence, based on observed residues (ATOM records):
    >7jslJ (J:)
qlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmnydklsralry
yynkrilhktkgkrftykfnfn

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records:
    >7jslL (L:)
gphmpgsrqiqlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmn
ydklsralryyynkrilhktkgkrftykfnfnklvlvnypfidvglaggavpqsappvps
ggs

    Sequence, based on observed residues (ATOM records):
    >7jslL (L:)
qlwhfilellrkeeyqgviawqgdygefvikdpdevarlwgvrkckpqmnydklsralry
yynkrilhktkgkrftykfnfn