PDB entry 7jro

View 7jro on RCSB PDB site
Description: plant mitochondrial complex iv from vigna radiata
Deposited on 2020-08-12, released 2021-01-20
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'a':
    Compound: cox1
    Species: Vigna radiata [TaxId:157791]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JRO (0-End)
  • Chain 'b':
    Compound: Cytochrome c oxidase subunit 2
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: cox3
    Species: Vigna radiata [TaxId:157791]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JRO (0-264)
  • Chain 'd':
    Compound: cox4
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: cytochrome c oxidase subunit 5b-2, mitochondrial
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Cytochrome c oxidase subunit 6A, mitochondrial
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: cytochrome c oxidase subunit 6b-1
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: Cytochrome c oxidase subunit 5C
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: COX7a
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: COX7c
    Species: Vigna radiata var. radiata [TaxId:3916]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HEA, CU, MG, PC1, 3PE, CDL, CUA, ZN, LYS

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'a':
    Sequence, based on SEQRES records:
    >7jroa (a:)
mtnpvrwlfstnhkdigtlyfifgaiagvmgtcfsvlirmelarpgdqilggnhqlynvl
itahaflmiffmvmpamiggfgnwfvpiligapdmafprlnnisfwllppslllllssal
vevgsgtgwtvypplsgitshsggavdlaifslhlsgvssilgsinfittifnmrgpgmt
mhrsplfvwsvlvtafllllslpvlagaitmlltdrnfnttffdpagggdpilyqhlfwf
fghpevyililpgfgiishivstfsgkpvfgylgmvyamisigvlgflvwahhmftvgld
vdtrayftaatmiiavptgikifswiatmwggsiqyktpmlfavgfiflftiggltgivl
ansgldialhdtyyvvahfhyvlsmgavfalfagfyywvgkifgrtypetlgqihfwitf
fgvnltffpmhflglsgmprripdypdayagwnalssfgsyisvvgiccffvvvtitsts
gnnitranipwaveqnsttlewlvqsppafhtfgelpaiketksyvk

    Sequence, based on observed residues (ATOM records):
    >7jroa (a:)
mtnpvrwlfstnhkdigtlyfifgaiagvmgtcfsvlirmelarpgdqilggnhqlynvl
itahaflmiffmvmpamiggfgnwfvpiligapdmafprlnnisfwllppslllllssal
vevgsgtgwtvypplsgitshsggavdlaifslhlsgvssilgsinfittifnmrgpgmt
mhrsplfvwsvlvtafllllslpvlagaitmlltdrnfnttffdpagggdpilyqhlfwf
fghpevyililpgfgiishivstfsgkpvfgylgmvyamisigvlgflvwahhmftvgld
vdtrayftaatmiiavptgikifswiatmwggsiqyktpmlfavgfiflftiggltgivl
ansgldialhdtyyvvahfhyvlsmgavfalfagfyywvgkifgrtypetlgqihfwitf
fgvnltffpmhflglsgmprripdypdayagwnalssfgsyisvvgiccffvvvtitsts
gnnitranipwaveqnsttlewlvqsppafhtfgelpaiketks

  • Chain 'b':
    Sequence, based on SEQRES records:
    >7jrob (b:)
mcggfpaisfcdapepwqlgfqdaatpimqgimdlhhdiffflvqiavfvlwvlsralwc
frskispipqrivhgttieilwtifpsiilmfiaipsftllysmddvvvdpaitikaigh
qwywsyeysdynnsdeqslafdsymvpeddlelgqlrllevdnrvvvpakthlrvlitsa
dvlhswavpslgvkcdavpgrlnqistfiqregvyygqcseicgtnhafmpivveavstk
dygswvsnqiq

    Sequence, based on observed residues (ATOM records):
    >7jrob (b:)
dapepwqlgfqdaatpimqgimdlhhdiffflvqiavfvlwvlsralwcfrskispipqr
ivhgttieilwtifpsiilmfiaipsftllysmddvvvdpaitikaighqwywsyeysdy
nnsdeqslafdsymvpeddlelgqlrllevdnrvvvpakthlrvlitsadvlhswavpsl
gvkcdavpgrlnqistfiqregvyygqcseicgtnhafmpivveavstkdygswvsnqi

  • Chain 'c':
    Sequence; same for both SEQRES and ATOM records:
    >7jroc (c:)
miesqrhsyhlvdpspwpisgslgalattvggvmymhsfqggatllslglifilytmfvw
wrdvlrestleghhtkvvqlglrygfilfivsevmflfaffwaffhsslaptveiggiwp
plgiwvldpweipflntlillssgaavtwahhailagkekravyalvatvllalvftgfq
gmeyyqapftisdsiygstfflatgfhgfhviigtlfliicgirqylghltkehhvgfea
aawywhfvdvvwlflfvsiywwggi

  • Chain 'd':
    Sequence, based on SEQRES records:
    >7jrod (d:)
mstkyivsailgsfgiawvcdyyvsekkifggstpgtitnkewgeetdkkfqawprtagp
pvvvnpitrqnfvvksrse

    Sequence, based on observed residues (ATOM records):
    >7jrod (d:)
mstkyivsailgsfgiawvcdyyvsekkifggstpgtitnkewgeetdkkfqawprtagp
pvvvnpitrqnfvvks

  • Chain 'e':
    Sequence, based on SEQRES records:
    >7jroe (e:)
mlrrflshsnlrslhtalspsrprfaaplltrhvtaqsgassvrkrvedvvpiatghere
eiqaslegrdileinhpegpfgtkeapaivksyfdrrivgcpggegedehdvvwfwleng
kphecpvcsqyfelkvvgpggdpyghgdhh

    Sequence, based on observed residues (ATOM records):
    >7jroe (e:)
piatghereeiqaslegrdileinhpegpfgtkeapaivksyfdrrivgcpggegedehd
vvwfwlengkphecpvcsqyfelkvvgpggdpyg

  • Chain 'f':
    Sequence, based on SEQRES records:
    >7jrof (f:)
matslvrsgflrtalrggargsqvpkrnfssaghhddayetakwekitylgivsctglai
ynlskghphteeppaypylhirnkefpwgpdglfetkkhh

    Sequence, based on observed residues (ATOM records):
    >7jrof (f:)
dayetakwekitylgivsctglaiynlskghphteeppaypylhirnkefpwgpdglfe

  • Chain 'g':
    Sequence, based on SEQRES records:
    >7jrog (g:)
maetaanksqslaeeyhvsdkqektavvekpvevkevenpqeagsveavvekiveettpv
apavaqessevspppaeesaeesteeqssgnvednsgnedaaektpeikletapadfrfp
ttnqtrhcftryieyhrcvaakgegasecdkfakyyrslcpgewidrwneqrengtfpgp
l

    Sequence, based on observed residues (ATOM records):
    >7jrog (g:)
eikletapadfrfpttnqtrhcftryieyhrcvaakgegasecdkfakyyrslcpgewid
rwneqrengtfpgp

  • Chain 'h':
    Sequence, based on SEQRES records:
    >7jroh (h:)
magpriahatlkgpsvvkeiiigitlglaagsvwkmhhwneqrkirtfydllekgeigvv
vdeq

    Sequence, based on observed residues (ATOM records):
    >7jroh (h:)
psvvkeiiigitlglaagsvwkmhhwneqrkirtfydllekgeigvvvd

  • Chain 'i':
    Sequence, based on SEQRES records:
    >7jroi (i:)
mseppfrprekliekqkhfqsvhkhtylkgpydkitsvaiplalaasslyligrgiynms
hgigkke

    Sequence, based on observed residues (ATOM records):
    >7jroi (i:)
seppfrprekliekqkhfqsvhkhtylkgpydkitsvaiplalaasslyligrgiynmsh
gigk

  • Chain 'j':
    Sequence, based on SEQRES records:
    >7jroj (j:)
mafnnalrsaakliassessistsvsrgfhstpmkrmggghghdepyyihakhmynldrm
khrglkmslavfsafsigvavpvyavifqqkktasa

    Sequence, based on observed residues (ATOM records):
    >7jroj (j:)
yyihakhmynldrmkhrglkmslavfsafsigvavpvyavifqqkkt