PDB entry 7jqq

View 7jqq on RCSB PDB site
Description: the bacteriophage phi-29 viral genome packaging motor assembly
Deposited on 2020-08-11, released 2021-05-19
The last revision was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA packaging protein
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 16
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA packaging protein
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 16
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA packaging protein
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 16
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA packaging protein
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 16
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA packaging protein
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 16
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: DNA (60-mer)
    Species: Bacillus virus phi29 [TaxId:10756]
  • Chain 'G':
    Compound: DNA (60-mer)
    Species: Bacillus virus phi29 [TaxId:10756]
  • Chain 'K':
    Compound: pRNA (117-MER)
    Species: Bacillus virus phi29 [TaxId:10756]
  • Chain 'L':
    Compound: pRNA (117-MER)
    Species: Bacillus virus phi29 [TaxId:10756]
  • Chain 'M':
    Compound: pRNA (117-MER)
    Species: Bacillus virus phi29 [TaxId:10756]
  • Chain 'N':
    Compound: pRNA (117-MER)
    Species: Bacillus virus phi29 [TaxId:10756]
  • Chain 'O':
    Compound: pRNA (117-MER)
    Species: Bacillus virus phi29 [TaxId:10756]
  • Heterogens: AGS, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jqqA (A:)
    mdkslfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpela
    kvsnyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdef
    irekdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrf
    nvyddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskf
    vfsivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlr
    klasafmngylrfdnqvirniayelfrkmriq
    

    Sequence, based on observed residues (ATOM records):
    >7jqqA (A:)
    slfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpelakvs
    nyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdefire
    kdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrfnvy
    ddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskfvfs
    ivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlrkla
    safmngylrfdnqvirniayelfrkmr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7jqqB (B:)
    mdkslfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpela
    kvsnyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdef
    irekdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrf
    nvyddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskf
    vfsivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlr
    klasafmngylrfdnqvirniayelfrkmriq
    

    Sequence, based on observed residues (ATOM records):
    >7jqqB (B:)
    slfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpelakvs
    nyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdefire
    kdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrfnvy
    ddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskfvfs
    ivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlrkla
    safmngylrfdnqvirniayelfrkmr
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7jqqC (C:)
    mdkslfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpela
    kvsnyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdef
    irekdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrf
    nvyddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskf
    vfsivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlr
    klasafmngylrfdnqvirniayelfrkmriq
    

    Sequence, based on observed residues (ATOM records):
    >7jqqC (C:)
    slfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpelakvs
    nyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdefire
    kdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrfnvy
    ddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskfvfs
    ivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlrkla
    safmngylrfdnqvirniayelfrkmr
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7jqqD (D:)
    mdkslfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpela
    kvsnyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdef
    irekdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrf
    nvyddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskf
    vfsivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlr
    klasafmngylrfdnqvirniayelfrkmriq
    

    Sequence, based on observed residues (ATOM records):
    >7jqqD (D:)
    slfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpelakvs
    nyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdefire
    kdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrfnvy
    ddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskfvfs
    ivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlrkla
    safmngylrfdnqvirniayelfrkmr
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7jqqE (E:)
    mdkslfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpela
    kvsnyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdef
    irekdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrf
    nvyddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskf
    vfsivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlr
    klasafmngylrfdnqvirniayelfrkmriq
    

    Sequence, based on observed residues (ATOM records):
    >7jqqE (E:)
    slfynpqkmlsydrilnfvigargigksyamkvypinrfikygeqfiyvrrykpelakvs
    nyfndvaqefpdhelvvkgrrfyidgklagwaiplsvwqseksnaypnvstivfdefire
    kdnsnyipnevsallnlmdtvfrnrervrciclsnavsvvnpyflffnlvpdvnkrfnvy
    ddalieipdsldfsserrktrfgrlidgteygemsldnqfigdsqvfiekrskdskfvfs
    ivyngftlgvwvdvnqglmyidtahdpstknvytlttddlnenmmlitnyknnyhlrkla
    safmngylrfdnqvirniayelfrkmr
    

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.