PDB entry 7jpx

View 7jpx on RCSB PDB site
Description: rabbit cav1.1 in the presence of 100 micromolar amlodipine in nanodiscs at 2.9 angstrom resolution
Deposited on 2020-08-10, released 2020-11-18
The last revision was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: voltage-dependent l-type calcium channel subunit alpha-1s
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Voltage-dependent calcium channel gamma-1 subunit
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Voltage-dependent calcium channel subunit alpha-2/delta-1
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: 6UB, CA, 3PE, PC1, POV

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jpxA (A:)
    mepsspqdeglrkkqpkkplpevlprppralfcltlqnplrkacisivewkpfetiillt
    ifancvalavylpmpeddnnslnlglekleyffltvfsieaamkiiaygflfhqdaylrs
    gwnvldfiivflgvftaileqvnviqsntapmsskgagldvkalrafrvlrplrlvsgvp
    slqvvlnsifkamlplfhiallvlfmviiyaiiglelfkgkmhktcyyigtdivatvene
    kpspcartgsgrpctingsecrggwpgpnhgithfdnfgfsmltvyqcitmegwtdvlyw
    vndaignewpwiyfvtlillgsffilnlvlgvlsgeftkerekaksrgtfqklrekqqle
    edlrgymswitqgevmdvedlregklsleeggsdteslyeieglnkiiqfirhwrqwnrv
    frwkchdlvksrvfywlvilivalntlsiasehhnqplwlthlqdianrvllslftieml
    lkmyglglrqyfmsifnrfdcfvvcsgilelllvesgamtplgisvlrcirllrlfkitk
    ywtslsnlvasllnsirsiaslllllflfiiifallgmqlfggrydfedtevrrsnfdnf
    pqalisvfqvltgedwnsvmyngimayggpsypgvlvciyfiilfvcgnyillnvflaia
    vdnlaeaesltsaqkakaeerkrrkmsrglpdkteeeksvmakkleqkpkgegipttakl
    kvdefesnvnevkdpypsadfpgddeedepeipvsprprplaelqlkekavpipeassff
    ifsptnkvrvlchrivnatwftnfillfillssaalaaedpiraesvrnqilgyfdiaft
    svftveivlkmttygaflhkgsfcrnyfnildllvvavslismglesstisvvkilrvlr
    vlrplrainrakglkhvvqcvfvairtignivlvttllqfmfacigvqlfkgkffscndl
    skmteeecrgyyyvykdgdptqmelrprqwihndfhfdnvlsammslftvstfegwpqll
    yraidsneedmgpvynnrvemaiffiiyiiliaffmmnifvgfvivtfqeqgeteyknce
    ldknqrqcvqyalkarplrcyipknpyqyqvwyvvtssyfeylmfalimlnticlgmqhy
    hqseemnhisdilnvaftiiftlemilkllafkargyfgdpwnvfdflivigsiidvils
    eidtflassgglyclgggcgnvdpdesarissaffrlfrvmrlikllsraegvrtllwtf
    iksfqalpyvallivmlffiyavigmqmfgkialvdgtqinrnnnfqtfpqavlllfrca
    tgeawqeillacsygklcdpesdyapgeeytcgtnfayyyfisfymlcafliinlfvavi
    mdnfdyltrdwsilgphhldefkaiwaeydpeakgrikhldvvtllrriqpplgfgkfcp
    hrvackrlvgmnmplnsdgtvtfnatlfalvrtalkiktegnfeqaneelraiikkiwkr
    tsmklldqvippigddevtvgkfyatfliqehfrkfmkrqeeyygyrpkkdtvqiqaglr
    tieeeaapeirrtisgdltaeeeleramveaameerifrrtgglfgqvdtflertnslpp
    vmanqrplqfaeiemeelespvfledfpqdartnplarantnnananvaygnsnhsnnqm
    fssvhcerefpgeaetpaagrgalshshralgphskpcagklngqlvqpgmpinqappap
    cqqpstdppergqrrtsltgslqdeapqrrssegstprrpapatalliqealvrggldtl
    aadagfvtatsqaladacqmepeevevaatellkaresvqgmasvpgslsrrsslgsldq
    vqgsqetlipprp
    

    Sequence, based on observed residues (ATOM records):
    >7jpxA (A:)
    acisivewkpfetiilltifancvalavylpmpeddnnslnlglekleyffltvfsieaa
    mkiiaygflfhqdaylrsgwnvldfiivflgvftaileqvnvvkalrafrvlrplrlvsg
    vpslqvvlnsifkamlplfhiallvlfmviiyaiiglelfkgkmhktcyyigtdivatve
    nekpspcartgsgrpctingsecrggwpgpnhgithfdnfgfsmltvyqcitmegwtdvl
    ywvndaignewpwiyfvtlillgsffilnlvlgvlsgeftkerekaksrvfywlviliva
    lntlsiasehhnqplwlthlqdianrvllslftiemllkmyglglrqyfmsifnrfdcfv
    vcsgilelllvesgamtplgisvlrcirllrlfkitkywtslsnlvasllnsirsiasll
    lllflfiiifallgmqlfggrydfedtevrrsnfdnfpqalisvfqvltgedwnsvmyng
    imayggpsypgvlvciyfiilfvcgnyillnvflaiavdnlaeaesltsavnatwftnfi
    llfillssaalaaedpiraesvrnqilgyfdiaftsvftveivlkmttygyfnildllvv
    avslismvvkilrvlrvlrplrainrakglkhvvqcvfvairtignivlvttllqfmfac
    igvqlfkgkffscndlskmteeecrgyyyvykdgdptqmelrprqwihndfhfdnvlsam
    mslftvstfegwpqllyraidsneedmgpvynnrvemaiffiiyiiliaffmmnifvgfv
    ivtfqeqgdknqrqcvqyalkarplrcyipknpyqyqvwyvvtssyfeylmfalimlnti
    clgmqhyhqseemnhisdilnvaftiiftlemilkllafkargyfgdpwnvfdflivigs
    iidvilseidtflsaffrlfrvmrlikllsraegvrtllwtfiksfqalpyvallivmlf
    fiyavigmqmfgkialvdgtqinrnnnfqtfpqavlllfrcatgeawqeillacsygklc
    dpesdyapgeeytcgtnfayyyfisfymlcafliinlfvavimdnfdyltrdwsilgphh
    ldefkaiwaeydpeakgrikhldvvtllrriqpplg
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7jpxE (E:)
    mspteapkvrvtlfcilvgivlamtavvsdhwavlsphmenhnttceaahfglwrictkr
    ialgedrscgpitlpgekncsyfrhfnpgesseifefttqkeysisaaaisvfslgflim
    gticalmafrkkrdyllrpasmfyvfaglclfvslevmrqsvkrmidsedtvwieyyysw
    sfacacaafvllflggislllfslprmpqnpwescmdaepeh
    

    Sequence, based on observed residues (ATOM records):
    >7jpxE (E:)
    mspteapkvrvtlfcilvgivlamtavvsdhwavlsphceaahfglwrictkrgekncsy
    fsisaaaisvfslgflimgticalmafrkkrdyllrpasmfyvfaglclfvslevmrqsv
    krmieyyyswsfacacaafvllflggislllfslprmpqnpwescmdae
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7jpxF (F:)
    maagrplawtltlwqawliligpsseepfpsavtikswvdkmqedlvtlaktasgvhqlv
    diyekyqdlytvepnnarqlveiaardiekllsnrskalvrlaleaekvqaahqwredfa
    snevvyynakddldpekndsepgsqrikpvfiddanfrrqvsyqhaavhiptdiyegsti
    vlnelnwtsalddvfkknreedpsllwqvfgsatglaryypaspwvdnsrtpnkidlydv
    rrrpwyiqgaaspkdmlilvdvsgsvsgltlklirtsvsemletlsdddfvnvasfnsna
    qdvscfqhlvqanvrnkkvlkdavnnitakgitdykkgfsfafeqllnynvsrancnkii
    mlftdggeeraqeifakynkdkkvrvftfsvgqhnydrgpiqwmacenkgyyyeipsiga
    irintqeyldvlgrpmvlagdkakqvqwtnvyldalelglvitgtlpvfnitgqfenktn
    lknqlilgvmgvdvsledikrltprftlcpngyyfaidpngyvllhpnlqpkpigvgipt
    inlrkrrpnvqnpksqepvtldfldaelendikveirnkmidgesgektfrtlvksqder
    yidkgnrtytwtpvngtdyslalvlptysfyyikakieetitqarysetlkpdnfeesgy
    tflaprdycsdlkpsdnntefllnfnefidrktpnnpscntdlinrvlldagftnelvqn
    ywskqknikgvkarfvvtdggitrvypkeagenwqenpetyedsfykrsldndnyvftap
    yfnksgpgayesgimvskaveiyiqgkllkpavvgikidvnswienftktsirdpcagpv
    cdckrnsdvmdcvilddggfllmanhddytnqigrffgeidpslmrhlvnisvyafnksy
    dyqsvcepgaapkqgaghrsayvpsiadilqigwwataaawsilqqfllsltfprlleaa
    dmedddftasmskqsciteqtqyffdndsksfsgvldcgncsrifhveklmntnlifimv
    eskgtcpcdtrlliqaeqtsdgpdpcdmvkqpryrkgpdvcfdnnvledytdcggvsgln
    pslwsiigiqfvllwlvsgsrhcll
    

    Sequence, based on observed residues (ATOM records):
    >7jpxF (F:)
    fpsavtikswvdkmqedlvtlaktasgvhqlvdiyekyqdlytvepnnarqlveiaardi
    ekllsnrskalvrlaleaekvqaahqwredfasnevvyynakddldpekndsepgsqrik
    pvfiddanfrrqvsyqhaavhiptdiyegstivlnelnwtsalddvfkknreedpsllwq
    vfgsatglaryypaspwvdnsrtpnkidlydvrrrpwyiqgaaspkdmlilvdvsgsvsg
    ltlklirtsvsemletlsdddfvnvasfnsnaqdvscfqhlvqanvrnkkvlkdavnnit
    akgitdykkgfsfafeqllnynvsrancnkiimlftdggeeraqeifakynkdkkvrvft
    fsvgqhnydrgpiqwmacenkgyyyeipsigairintqeyldvlgrpmvlagdkakqvqw
    tnvyldalelglvitgtlpvfnitgqfenktnlknqlilgvmgvdvsledikrltprftl
    cpngyyfaidpngyvllhpnlqpkpigvgiptinlrkrrpnvqnpksqepvtldfldael
    endikveirnkmidgesgektfrtlvksqderyidkgnrtytwtpvngtdyslalvlpty
    sfyyikakieetitqarysetlkpdnfeesgytflaprdycsdlkpsdnntefllnfnef
    idrktpnnpscntdlinrvlldagftnelvqnywskqknikgvkarfvvtdggitrvypk
    eagenwqenpetyedsfykrsldndnyvftapyfnksgpgayesgimvskaveiyiqgkl
    lkpavvgikidvnswienftkdckrnsdvmdcvilddggfllmanhddytnqigrffgei
    dpslmrhlvnisvyafnksydyqsvcepgaaskqsciteqtqyffdndsksfsgvldcgn
    csrifhveklmntnlifimveskgtcpcdtrlliqaeqtsdgpdpcdmvkqpryrkgpdv
    cfdnnvledytdc