PDB entry 7jn5

View 7jn5 on RCSB PDB site
Description: Crystal structure of SARS-CoV receptor binding domain in complex with human antibody CR3022
Class: Viral protein/IMMUNE SYSTEM
Keywords: SARS, coronavirus, antibody, IMMUNE SYSTEM, Viral protein-IMMUNE SYSTEM complex
Deposited on 2020-08-03, released 2020-10-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-12, with a file datestamp of 2021-05-07.
Experiment type: XRAY
Resolution: 2.71 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'F':
    Compound: Spike glycoprotein
    Species: Human SARS coronavirus [TaxId:694009]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7jn5f_
  • Chain 'H':
    Compound: CR3022 Heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JN5 (0-220)
    Domains in SCOPe 2.08: d7jn5h_
  • Chain 'L':
    Compound: CR3022 Light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JN5 (0-End)
    Domains in SCOPe 2.08: d7jn5l1, d7jn5l2
  • Heterogens: PO4, NAG, HOH

PDB Chain Sequences:

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >7jn5F (F:)
    rvvpsgdvvrfpnitnlcpfgevfnatkfpsvyawerkkisncvadysvlynstffstfk
    cygvsatklndlcfsnvyadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawnt
    rnidatstgnhnykyrylrhgklrpferdisnvpfspdgkpctppalncywplndygfyt
    ttgigyqpyrvvvlsfellnapatvcgpklstdliknqcvnfsghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >7jn5F (F:)
    cpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfsnv
    yadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnykyrylrhgklrpfe
    rdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvlsfenapatvcgp
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >7jn5H (H:)
    qmqlvqsgtevkkpgeslkisckgsgygfitywigwvrqmpgkglewmgiiypgdsetry
    spsfqgqvtisadksintaylqwsslkasdtaiyycaggsgistpmdvwgqgttvtvvsr
    rlppsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
    yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >7jn5L (L:)
    diqltqspdslavslgeratinckssqsvlyssinknylawyqqkpgqppklliywastr
    esgvpdrfsgsgsgtdftltisslqaedvavyycqqyystpytfgqgtkveikrtvaaps
    vfifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstys
    lsstltlskadyekhkvyacevthqglsspvtksfnrgecs
    

    Sequence, based on observed residues (ATOM records): (download)
    >7jn5L (L:)
    diqltqspdslavslgeratinckssqsvlyssinknylawyqqkpgqppklliywastr
    esgvpdrfsgsgsgtdftltisslqaedvavyycqqyystpytfgqgtkveikrtvaaps
    vfifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstys
    lsstltlskadyekhkvyacevthqglsspvtksfnrgec