PDB entry 7jk3

View 7jk3 on RCSB PDB site
Description: structure of drosophila orc bound to gc-rich dna and cdc6
Deposited on 2020-07-27, released 2020-09-09
The last revision was dated 2020-09-09, with a file datestamp of 2020-09-04.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Origin recognition complex subunit 1
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Orc1, CG10667
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Origin recognition complex subunit 2
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Orc2, CG3041
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Origin recognition complex subunit 3
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Orc3, CG34315-RB, DmelCG4088, DmORC3, DmOrc3, l(2)49Fd, l(2)vr6, LAT, Lat, lat, lat-RA, latheo, ORC, ORC3, orc3, vr-6, vr6, CG4088, Dmel_CG4088
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Origin recognition complex subunit 4
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Orc4, DmelCG2917, DmORC4, dmOrc4, ORC, ORC4, orc4, rDmORC, CG2917, Dmel_CG2917
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Origin recognition complex subunit 5
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Orc5, CG7833
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Origin recognition complex subunit 6
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Orc6, CG1584
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Cell division control protein
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Cdc6, CDC6, cdc6, DmCdc6, DmelCG5971, CG5971, Dmel_CG5971
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: DNA (33-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'I':
    Compound: DNA (33-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ATP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jk3A (A:)
snaprrsihlsniveqrvfeddeiistpkrgrskktvqdndedyspkksvqktptrtrrs
stttktattpskgittatatpmtpsqkmkkiragelspsmqqrtdlpakdsskselqlar
eqlhvsvvpkslpcrerefeniyaflegkiqdqcggcmyvsgvpgtgktatvtgvirtlq
rmakqnelpafeyleingmrlteprqayvqiykqltgktvsweqahallekrfttpaprr
vttvllvdeldilcnrrqdvvynlldwptksaaklvvvtiantmdlperllmgkvtsrlg
ltrltfqpyshkqlqeivtarlggsetfkgeavqlvarkvaavsgdarraldicrratei
adtaavkcvtmlhvqqalaemiasakvqairncsrmeqiflqaiaaevtrtgveettfmg
vyqqvetiaafmgvtfpppgralrlcsklgaerliisehsrndlfqkillnvsaddihya
lrveemvn

    Sequence, based on observed residues (ATOM records):
    >7jk3A (A:)
tpsqkmkkiragelspsmqqrtdlpakdsskselqlareqlhvsvvpkslpcrerefeni
yaflegkiqdqcggcmyvsgvpgtgktatvtgvirtlqrmakqnelpafeyleingmrlt
eprqayvqiykqltgktvsweqahallekrfttpaprrvttvllvdeldilcnrrqdvvy
nlldwptksaaklvvvtiantmdlperllmgkvtsrlgltrltfqpyshkqlqeivtarl
ggsetfkgeavqlvarkvaavsgdarraldicrrateiadtaavkcvtmlhvqqalaemi
asakvqairncsrmeqiflqaiaaevtrtgveettfmgvyqqvetiaafmgvtfpppgra
lrlcsklgaerliisehsrndlfqkillnvsaddihyalrv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7jk3B (B:)
msasnkggyktprkenlmsienltnseeesedlntamvgnavesqpkvtsrrstrrpspt
kkyqayqkesngkgqeerivvnyvemsderssdaedqeeeesieesenaarpaakdlhli
qseynvagtsmfgfntpkkrdamalaalnatpctpktpktprlgvktpdtkrkksmdqpk
tpahvrtrvkkqiakivadsdedfsgdesdfrpsdeessssssssdagnssdndaaddep
ktpsrarraivvpvlpktpsaarlrqsarakksnefvpesdgyfhshasskiltsdhtld
rlknprlaadrvfsllseiktsaehegsinaimeeyrsyfpkwmcilnegfnillyglgs
khqllqsfhrevlhkqtvlvvngffpsltikdmldsitsdildagispanpheavdmiee
efalipethlflivhnldgamlrnvkaqailsrlaripnihllasidhintpllwdqgkl
csfnfswwdcttmlpytnetafensllvqnsgelalssmrsvfsslttnsrgiymlivky
qlknkgnatyqgmpfrdlysscreaflvssdlalraqltefldhklvkskrsvdgseqlt
ipidgallqqfleeqekk

    Sequence, based on observed residues (ATOM records):
    >7jk3B (B:)
fvpesdgyfhsaehegsinaimeeyrsyfpkwmcilnegfnillyglgskhqllqsfhre
vlhkqtvlvvngffpsltikdmldsitsdildagispanpheavdmieeefalipethlf
livhnldgamlrnvkaqailsrlaripnihllasidhintpllwdqgklcsfnfswwdct
tmlpytnetafensalssmrsvfsslttnsrgiymlivkyqlknkgmpfrdlysscreaf
lvssdlalraqltefldhklvkskreqltipidgallqqfleeqe

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7jk3C (C:)
mdptisvskgcfvykngatragkkaaskrkrpaaesssllgkevvqqpfyeeyrkawnqi
ndhiadlqhrsyartleqlvdfvvgqaerdtpdevlptaalltginqpdhlsqftaltqr
lhaqraamvcvlqsrdcatlkaavetlvfglvednaeveqmededededgaerdrkrlrr
sqctmkqlkswytnnfdseqkrrqlvvilpdfecfnasvlqdlililsahcgslpfvlvl
gvatamtavhgtlpyhvsskirlrvfqtqaaptglnevldkvllspkyafhlsgktfkfl
thiflyydfsihgfiqgfkyclmehffggnafalctdyskalgrikqlthedmetirrlp
sfrpyveqindckriiavltdddylkkklpqllrdcllhfllfrcslefltelvgdlprc
plgklrrelyvnclnraiistpeykeclqmlsflskdefvakvnralerteqflveeiap
lelgeactavlrpkleairlavdevvkatmatitttspnetrqatdhltpvasrqelkdq
llqrskedkmrhqlntpttqfgralqktlqlietqivqdhlralqdappihelfvfsdia
tvrrniigapraalhtalnnphfymqckccelqdqsllvgtlpdlsvvyklhlecgrmin
lfdwlqafrsvvsdsdheevaqeqidpqiqarftravaelqflgyikmskrktdhatrlt
w

    Sequence, based on observed residues (ATOM records):
    >7jk3C (C:)
mdptisvskgcfvykngatrsllgkevvqqpfyeeyrkawnqindhiadlqhrsyartle
qlvdfvvgqaerevlptaalltginqpdhlsqftaltqrlhaqraamvcvlqsrdcatlk
aavetlvfglvednaeverlrrsqctmkqlkswytnnfdserrqlvvilpdfecfnasvl
qdlililsahcgslpfvlvlgvatamtavhgtlpyhvsskirlrvfqtqaaptglnevld
kvllspkyafhlsgktfkflthiflyydfsihgfiqgfkyclmehffggnafalctdysk
algrikqlthedmetirrlpsfrpyveqindckriiavltdddylkkklpqllrdcllhf
llfrcslefltelvgdlprcplgklrrelyvnclnraiistpeykeclqmlsflskdefv
akvnralerteqflveeiaplelgeactavlrpkleairlavdevvkagralqktlqlie
tqivqdhlralqdappihelfvfsdiatvrrniigapraalhtalnnphfymqckccelq
dqsllvgtlpdlsvvyklhlecgrminlfdwlqafrsvvpqiqarftravaelqflgyik
mskrktdhatrltw

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7jk3D (D:)
snampeadrelvsirrflkerlqrdyttlrgyakersnvrlllqrtaemgesnsllllgp
rgsgkttlinsvladllpnksfgentlivhldgnlhtddrvalksitvqmqlenaadgkv
fgsfaenlafllqclkaggkhsksvifileefdlfcahhnqtllynlfdvsqsaqapicv
lgvtcrldviellekrvksrfshrqvflfpslrrfedyvdlcrdllslptgnslllaaek
iynlqniqsgalyfsrnhfdpgeygfsprlrdawnkqickvlatqqarstlqalhdfdis
eaylknflfrlvahlrpqsphitaekmaavgsqfegddkiellcglsvlelcliiaikhh
sqiydrdsfnfeiiyarfskfakvsttmqaversivlkafehlriaelimpltggagggv
gkvqkefemhklaltysqihhcmqryqalptevaqwaqssli

    Sequence, based on observed residues (ATOM records):
    >7jk3D (D:)
peadrelvsirrflkerlqrdyttlrgyakersnvrlllqrtaemgesnsllllgprgsg
kttlinsvladllpnksfgentlivhldgnlhtddrvalksitvqmqlenaadgkvfgsf
aenlafllqclkaggkhsksvifileefdlfcahhnqtllynlfdvsqsaqapicvlgvt
crldviellekrvksrfshrqvflfpslrrfedyvdlcrdllslptgnslllaaekiynl
qniyfsrnhfdpgeygfsprlrdawnkqickvlatqqarstlqalhdfdiseaylknflf
rlvahlrpqsphitaekmaavgsqfegddkiellcglsvlelcliiaikhhsqiydrdsf
nfeiiyarfskfakvsttmqaversivlkafehlriaelimpltvqkefemhklaltysq
ihhcmqryqalptevaqwaqs

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7jk3E (E:)
meaicssleplfpcreaaietlgeligdssetypsaiylfghsgtgktaltraflkecgk
rqnvrtahlnaiecyttkimleilldslapdqgdalkvdnmldfveqlrrqaatrvedqg
fliavdnaerlrdmdanvlpvllrlqeltnlnlcvillsqlpfekfynktglseivclhl
aqynkaetqrilgsdfqqvrnqlleqfaqdkkrleicqeavtedfynnylnlflsvfyka
crdvpelqltarkclstylepvldgtvdatdisrlwrhiagplrsaltqiymriekpaee
vedftaiedqsvrklaqslelpyyakflliaaflashnaakqdkrlfvkhhgkqrkrmqt
vnarakttekmsttlgpksfsidrllaifyaileekvgltcnllsqistlvhlnllsfvs
geqnimegsarlqctiglefvlqigkvvgfnvrqylcdfm

    Sequence, based on observed residues (ATOM records):
    >7jk3E (E:)
meaicssleplfpcreaaietlgeligdssetypsaiylfghsgtgktaltraflkecgk
rqnvrtahlnaiecyttkimleilldslapdqgdalkvdnmldfveqlrrqaatrvedqg
fliavdnaerlrdmdanvlpvllrlqeltnlnlcvillsqlpfekfynktglseivclhl
aqynkaetqrilgsdfqqvrnqlleqkkrleicqeavtedfynnylnlflsvfykacrdv
pelqltarkclstylepvldgsrlwrhiagplrsaltqiymrieslelpyyakflliaaf
lashnaakqdkrlfvklgpksfsidrllaifyaileekvgltcnllsqistlvhlnllsf
vsgeqnimegsarlqctiglefvlqigkvvgfnvrqyl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7jk3F (F:)
mttlieqlitkmglreepnvlekttelvrllelrstnvplqineygkivlcadlascmig
iafdkeqalklsglrksqylnnkrmfeklldlnklasvndicvqlglnevarkaeelmtl
fkgvaatedmgtdtshpqyatmavfqacrllkkkvsksklmpfsnlrpsqfqlleqqwer
miakhhkeskvpsstdmegklkenqnenikgheakkahkpppedyeiwkarmlakaqakl
keleasqshmdsqllea

    Sequence, based on observed residues (ATOM records):
    >7jk3F (F:)
edyeiwkarmlakaqak

  • Chain 'G':
    Sequence, based on SEQRES records:
    >7jk3G (G:)
snannlpspsrnkyqnarrvlnsaetqnlpgresqlqelreffsnhlesqtsgslyvsgq
pgtgktaclslllrdpdfskrlqrvyinctsiasvgavykklctelqlkvsgrterdhle
aiqrhlktakrmlllvldeidqlctsrqevlytifewpalpgsrillvgiansldltdra
lmrlnarcelkprlmhfppyskqqiveifksrlaeaevldvfppvtlqllaakvsaisgd
vrraldigrrvveiaeqqkrdgekefnmkalqlegkdaveakekqdtlkpvqvtqvaavl
nkvygasqnleedieasfplqqklmlctlvlmlrnernkdismgrlhevyrrvcakrnil
aldqaeftgtvdlvetrgilrimrkkeprlhkvllqwdeeevhaalsdkqliasilsdta
clsk

    Sequence, based on observed residues (ATOM records):
    >7jk3G (G:)
rnkyqnarrvlnsaetqnlpgresqlqelreffsnhlesqtsgslyvsgqpgtgktacls
lllrdpdfskrlqrvyinctsiasvgavykklctelqlkvsgrterdhleaiqrhlktak
rmlllvldeidqlctsrqevlytifewpalpgsrillvgiansldltdralmrlnarcel
kprlmhfppyskqqiveifksrlaeaevldvfppvtlqllaakvsaisgdvrraldigrr
vveiaeqqkrlkpvqvtqvaavlnkvyfplqqklmlctlvlmlrnernkdismgrlhevy
rrvcakrnilaldqaeftgtvdlvetrgilrimrkkeprlhkvllqwdeeevhaalsdkq
liasilsdtacl

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.