PDB entry 7jjc

View 7jjc on RCSB PDB site
Description: crystal structure of neuropilin-1 b1 domain in complex with sars-cov-2 s1 c-end rule (cendr) peptide
Deposited on 2020-07-25, released 2020-10-28
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 2.36 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed):
    • Uniprot O14786 (11-165)
      • expression tag (7-10)
  • Chain 'B':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed):
    • Uniprot O14786 (11-165)
      • expression tag (0-10)
  • Chain 'C':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed):
    • Uniprot O14786 (11-165)
      • expression tag (7-10)
  • Chain 'D':
    Compound: Neuropilin-1
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP1, NRP, VEGF165R
    Database cross-references and differences (RAF-indexed):
    • Uniprot O14786 (11-165)
      • expression tag (0-10)
  • Chain 'E':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2, synthetic [TaxId:2697049]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PEG, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jjcA (A:)
gsenlyqgghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgeds
yrewiqvdlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlf
qgntnptdvvvavfpkplitrfvrikpatwetgismrfevygckit

    Sequence, based on observed residues (ATOM records):
    >7jjcA (A:)
gghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqv
dlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnpt
dvvvavfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >7jjcB (B:)
gsenlyqgghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgeds
yrewiqvdlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlf
qgntnptdvvvavfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7jjcC (C:)
gsenlyqgghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgeds
yrewiqvdlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlf
qgntnptdvvvavfpkplitrfvrikpatwetgismrfevygckit

    Sequence, based on observed residues (ATOM records):
    >7jjcC (C:)
gghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqv
dlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnpt
dvvvavfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >7jjcD (D:)
gsenlyqgghmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgeds
yrewiqvdlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlf
qgntnptdvvvavfpkplitrfvrikpatwetgismrfevygckit

  • Chain 'E':
    Sequence, based on SEQRES records:
    >7jjcE (E:)
nsprrar

    Sequence, based on observed residues (ATOM records):
    >7jjcE (E:)
rar

  • Chain 'F':
    Sequence, based on SEQRES records:
    >7jjcF (F:)
nsprrar

    Sequence, based on observed residues (ATOM records):
    >7jjcF (F:)
rar

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >7jjcG (G:)
nsprrar

  • Chain 'H':
    Sequence, based on SEQRES records:
    >7jjcH (H:)
nsprrar

    Sequence, based on observed residues (ATOM records):
    >7jjcH (H:)
rar