PDB entry 7jhj

View 7jhj on RCSB PDB site
Description: structure of the epstein-barr virus gpcr bilf1 in complex with human gi
Deposited on 2020-07-20, released 2021-07-07
The last revision was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Guanine nucleotide-binding protein G(i) subunit alpha-1
    Species: Homo sapiens [TaxId:9606]
    Gene: GNAI1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
    Species: Homo sapiens [TaxId:9606]
    Gene: GNB1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62873 (6-344)
      • expression tag (0-5)
  • Chain 'C':
    Compound: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
    Species: Homo sapiens [TaxId:9606]
    Gene: GNG2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Antibody fragment ScFv16
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 7JHJ (0-255)
  • Chain 'R':
    Compound: bilf1
    Species: Epstein-Barr virus [TaxId:10376]
    Gene: BILF1, EBVaGC1_059, HHV4_BILF1, SNU-719_063, YCCEL1_065
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3KSP2 (0-311)
      • expression tag (312-320)
  • Heterogens: Y01

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jhjA (A:)
gctlsaedkaaverskmidrnlredgekaarevkllllgagesgkstivkqmkiiheagy
seeeckqykavvysntiqsiiaiiramgrlkidfgdsaraddarqlfvlagaaeegfmta
elagvikrlwkdsgvqacfnrsreyqlndsaayylndldriaqpnyiptqqdvlrtrvkt
tgivethftfkdlhfkmfdvggqrserkkwihcfegvtaiifcvalsdydlvlaedeemn
rmhesmklfdsicnnkwftdtsiilflnkkdlfeekikksplticypeyagsntyeeaaa
yiqcqfedlnkrkdtkeiythftcatdtknvqfvfdavtdviiknnlkdcglf

    Sequence, based on observed residues (ATOM records):
    >7jhjA (A:)
tlsaedkaaverskmidrnlredgekaarevkllllgagesgkstivkqmkitgivethf
tfkdlhfkmfdvggqrserkkwihcfegvtaiifcvalsdydlvnrmhesmklfdsicnn
kwftdtsiilflnkkdlfeekikksplticypeyagsntyeeaaayiqcqfedlnkrkdt
keiythftcatdtknvqfvfdavtdviiknnlkdcglf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >7jhjB (B:)
gpgssgseldqlrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrtrrtlrghl
akiyamhwgtdsrllvsasqdgkliiwdsyttnkvhaiplrsswvmtcayapsgnyvacg
gldnicsiynlktregnvrvsrelaghtgylsccrflddnqivtssgdttcalwdietgq
qtttftghtgdvmslslapdtrlfvsgacdasaklwdvregmcrqtftghesdinaicff
pngnafatgsddatcrlfdlradqelmtyshdniicgitsvsfsksgrlllagyddfncn
vwdalkadragvlaghdnrvsclgvtddgmavatgswdsflkiwn

    Sequence, based on observed residues (ATOM records):
    >7jhjB (B:)
dqlrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrtrrtlrghlakiyamhwg
tdsrllvsasqdgkliiwdsyttnkvhaiplrsswvmtcayapsgnyvacggldnicsiy
nlktregnvrvsrelaghtgylsccrflddnqivtssgdttcalwdietgqqtttftght
gdvmslslapdtrlfvsgacdasaklwdvregmcrqtftghesdinaicffpngnafatg
sddatcrlfdlradqelmtyshdniicgitsvsfsksgrlllagyddfncnvwdalkadr
agvlaghdnrvsclgvtddgmavatgswdsflkiwn

  • Chain 'C':
    Sequence, based on SEQRES records:
    >7jhjC (C:)
asnntasiaqarklveqlkmeanidrikvskaaadlmayceahakedplltpvpasenpf
rekkffc

    Sequence, based on observed residues (ATOM records):
    >7jhjC (C:)
iaqarklveqlkmeanidrikvskaaadlmayceahakedplltpvpasenpf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >7jhjD (D:)
dvqlvesggglvqpggsrklscsasgfafssfgmhwvrqapekglewvayissgsgtiyy
adtvkgrftisrddpkntlflqmtslrsedtamyycvrsiyyygsspfdfwgqgttltvs
sggggsggggsggggsdivmtqatssvpvtpgesvsiscrssksllhsngntylywflqr
pgqspqlliyrmsnlasgvpdrfsgsgsgtaftltisrleaedvgvyycmqhleypltfg
agtklelkgslevlfq

    Sequence, based on observed residues (ATOM records):
    >7jhjD (D:)
dvqlvesggglvqpggsrklscsasgfafssfgmhwvrqapekglewvayissgsgtiyy
adtvkgrftisrddpkntlflqmtslrsedtamyycvrsiyyygsspfdfwgqgttltvs
ssdivmtqatssvpvtpgesvsiscrssksllhsngntylywflqrpgqspqlliyrmsn
lasgvpdrfsgsgsgtaftltisrleaedvgvyycmqhleypltfgagtklel

  • Chain 'R':
    Sequence, based on SEQRES records:
    >7jhjR (R:)
mlstmapgstvgtlvanmtsvnatedactksysaflsgmtslllvllilltlagilfiif
vrklvhrmdvwliallielllwvlgkmiqefsstglclltqnmmflglmcsvwthlgmal
ektlalfsrtpkrtshrnvclylmgvfclvllliiillitmgpdanlnrgpnmcregptk
gmhtavqglkagcyllaavlivlltviiiwkllrtkfgrkprlicnvtftglicafswfm
lslpllflgeagslgfdcteslvaryypgpaaclallliilyawsfshfmdslknqvtvt
aryfrrvpsqstaaalevlfq

    Sequence, based on observed residues (ATOM records):
    >7jhjR (R:)
ctksysaflsgmtslllvllilltlagilfiifvrklvhrmdvwliallielllwvlgkm
iqefsstglclltqnmmflglmcsvwthlgmalektlalfsrtpkrtshrnvclylmgvf
clvllliiillitmgpdanlnrgpnmcregptkgmhtavqglkagcyllaavlivlltvi
iiwkllrtkfgrkprlicnvtftglicafswfmlslpllflgeagslgfdcteslvaryy
pgpaaclallliilyawsfshfmdslknqvtvtaryf