PDB entry 7jgd

View 7jgd on RCSB PDB site
Description: cryo-em structure of p. falciparum var2csa fcr3 core at 3.4 a
Deposited on 2020-07-19, released 2021-01-13
The last revision was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: EM
Resolution: 3.38 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Erythrocyte membrane protein 1
    Species: Plasmodium falciparum [TaxId:5833]
    Gene: var
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >7jgdA (A:)
    tgmdststiankieeylgaksddskidellkadpseveyyrsggdgdylknnickitvnh
    sdsgkydpcekklppyddndqwkcqqnssdgsgkpenicvpprrerlctynlenlkfdki
    rdnnafladvlltarnegekivqnhpdtnssnvcnalersfadladiirgtdqwkgtnsn
    leknlkqmfakirendkvlqdkypkdqkytklreawwnanrqkvwevitcgarsndllik
    rgwrtsgksdrkknfelcrkcghyekevptkldyvpqflrwltewiedfyrekqnliddm
    erhreectredhkskegtsycstckdkckkycecvkkwktewenqenkykdlyeqnknkt
    sqkntsryddyvkdffekleanysslenyikgdpyfaeyatklsfilnpsdannpsgeta
    nhndeacncnesgissvgqaqtsgpssnktcithssiktnkkkeckdvklgvrendkdlk
    icviedtslsgvdncccqdllgilqencsdnkrgsssndscdnknqdecqkklekvfasl
    tngykcdkcksgtsrskkkwiwkkssgneeglqeeyantiglpprtqslylgnlpklenv
    cedvkdinfdtkekflagclivsfhegknlkkrypqnknsgnkenlckaleysfadygdl
    ikgtsiwdneytkdlelnlqnnfgklfgkyikknntaeqdtsyssldelreswwntnkky
    iwtamkhgaemnittcnadgsvtgsgsscddiptidlipqylrflqewvenfceqrqakv
    kdvitncksckesgnkcktecktkckdecekykkfieacgtagggigtagspwskrwdqi
    ykryskhiedakrnrkagtkncgtssttnaaastdenkcvqsdidsffkhlidiglttps
    sylsnvlddnicgadkapwttyttytttekcnkerdksksqssdtlvvvnvpsplgntpy
    rykyacqckiptneetcddrkeymnqwscgsartmkrgykndnyelckyngvdvkpttvr
    snsskldgndvtffnlfeqwnkeiqyqieqymtnaniscidekevldsvsdegtpkvrgg
    yedgrnnntdqgtnckekckcyklwiekindqwgkqkdnynkfrskqiydankgsqnkkv
    vslsnflffscweeyiqkyfngdwskiknigsdtfeflikkcgnnsahgeeifneklkna
    ekkckenestdtninksetscdlnatnyirgcqsktydgkifpgkggekqwickdtiihg
    dtngacipprtqnlcvgelwdksyggrsnikndtkellkekiknaihketellyeyhdtg
    taiiskndkkgqkgkndpnglpkgfchavqrsfidyknmilgtsvniyehigklqedikk
    iiekgtpqqkdkiggvgsstenvnawwkgieremwdavrcaitkinkknnnsifngdecg
    vspptgndedqsvswfkewgeqfcierlryeqnireactingknekkcinsksgqgdkiq
    gackrkcekykkyisekkqewdkqktkyenkyvgksasdllkenypecisanfdfifndn
    ieyktyypygdyssicsceqvkyykynnaekknnkslcyekdndmtwskkyikklengrs
    legvyvpprrqqlclyelfpiiikneegmekakeelletlqivaereayylwkqynptgk
    giddankkaccairgsfydlediikgndlvhdeytkyidsklneifgssdtndidtkrar
    tdwwenetitngtdrktirqlvwdamqsgvryaveeknenfplcmgvehigiakpqfirw
    leewtnefcekytkyfedmkskcdppkradtcgdnsnieckkacanytnwlnpkriewng
    msnyynkiyrksnkeseggkdysmimaptvidylnkrchgeingnyiccscknigayntt
    sgtvnkklqkketeceeekgpldlmnevlnkmdkkysahkmkctevylehveeqlneidn
    aikdyklypldrcfddqtkmkvcdliadaigckdktkldeldewndmdlrgtynkhkgvl
    ipprrrqlcfsrivrgpanlrslnefkeeilkgaqsegkflgnyykehkdkekaleamkn
    sfydyediikgtdmltniefkdikikldrlleketnntkkaedwwktnkksiwnamlcgy
    kksgnkiidpswctipttetppqflrwikewgtnvciqkqehkeyvkskcsnvtnlgaqa
    sesnnctseikkyqewsrkrsirwetiskrykkykrmdilkdvkepdantylrehcskcp
    cgfndmeemnnnednekeafkqikeqvkipaeledviyrikhheydkgndyicnkyknih
    drmkknngnfvtdnfvkksweisngvlipprrknlflyidpskiceykkdpklfkdfiyw
    safteverlkkayggarakvvhamkysftdigsiikgddmmeknssdkigkilgdtdgqn
    ekrkkwwdmnkyhiwesmlcgyreaegdtetnencrfpdiesvpqflrwfqewsenfcdr
    rqklydklnsecisaectngsvdnskcthacvnyknyiltkkteyeiqtnkydnefknkn
    sndkdapdylkekcndnkceclnkhiddknktwknpyetledtfkskcdcpkplpspikp
    ddlppqadepfgtkhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >7jgdA (A:)
    lkadpseveyyrsggdgdylknnickitvnhsdsgcekklppicvpprrerlctynfdki
    rdnnafladvlltarnegekivqnhpdtnssnvcnalersfadladiirgtdqwkgtnsn
    leknlkqmfakirendkvlytklreawwnanrqkvwevitcgarsnelcrkcghyekevp
    tkldyvpqflrwltewiedfyrekqnliddmerhreectsycstckdkckkycecvkkwk
    tewenqenkykdlyeqnkntsryddyvkdffekleatsrskkkwiwkkssgneeglqeey
    antiglpprtqslylgnlpklenvcedgclivsfhegknlkkrypqnknsgnkenlckal
    eysfadygdlikgtsiwdneytkdlelnlqnnfgklfgssldelreswwntnkkyiwtam
    khgaemnittgsgsscddiptidlipqylrflqewvenfceqrqakvkdvitnckscckt
    kckdecekykkfieacggigtagspwskrwdqiykryskhiedakrnrkagtknccvqsd
    idsffkhlidiglttpssylsnvlddnicgadkapwttyttytttekcdtlvvvnvpspl
    gntpyrykyacqckiptneetcddrkeymnqwsckndnyelckyngvdvkpttvrsnssk
    ldgndvtffnlfeqwnkeiqyqieqymtnanckekckcyklwiekindqwgkqkdnynkf
    rskqiydkvvslsnflffscweeyiqkyfngdwskiknigsdtfeflikkcgnnsahgee
    ifneklknaekkckenestscdlnatnyirgcqsktydgkifgekqwicgacipprtqnl
    cvgelllkekiknaihketellyeyhdtgtaiiskndkkgqkgkndpnglpkgfchavqr
    sfidyknmilgtsvniyehigklqedikkiinawwkgieremwdavrcaitkinkknnns
    ifngdecgvspptgndedqsvswfkewgeqfcierlryeqnireactidkiqgackrkce
    kykkyisekkqewdkqktkyenkyvgksasdllkenypecisanfdfifndnieyktyyp
    ygdyssicsceqvkyykynnaekknnkslcyekdndmtwskkyikegvyvpprrqqlcly
    elfpiiikneegmekakeelletlqivaereayylwkqynptgkgiddankkaccairgs
    fydlediikgndlvhdeytkyidsklneifgssdtndidtkrartdwwenetrktirqlv
    wdamqsgvryaveeknenfplcmgvehigiakpqfirwleewtnefcekytkyfedmksk
    cieckkacanytnwlnpkriewngmsnyynkiyrksnkeseggkdysmimaptvidylnk
    rchgeingnyiccscknigaynttsgtvnkklqkketeceeekgpldlmnevlnk