PDB entry 7f0l

View 7f0l on RCSB PDB site
Description: structure of photosynthetic lh1-rc super-complex of rhodobacter sphaeroides monomer
Class: photosynthesis
Keywords: lh1-rc complex, photosynthesis, purple bacteria
Deposited on 2021-06-05, released 2021-11-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-11-17, with a file datestamp of 2021-11-12.
Experiment type: EM
Resolution: 2.94 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0l1_
  • Chain '2':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0l2_
  • Chain '3':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0l3_
  • Chain '4':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0l4_
  • Chain '5':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0l5_
  • Chain '6':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0l6_
  • Chain '7':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0l7_
  • Chain '8':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0l8_
  • Chain 'A':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0la_
  • Chain 'B':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lb_
  • Chain 'D':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0ld_
  • Chain 'E':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0le_
  • Chain 'F':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0lf_
  • Chain 'G':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lg_
  • Chain 'H':
    Compound: reaction center protein h chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-259)
  • Chain 'I':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0li_
  • Chain 'J':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lj_
  • Chain 'K':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0lk_
  • Chain 'L':
    Compound: Photosynthetic reaction center L subunit
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-281)
    Domains in SCOPe 2.08: d7f0ll_
  • Chain 'M':
    Compound: reaction center protein m chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-307)
    Domains in SCOPe 2.08: d7f0lm_
  • Chain 'N':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0ln_
  • Chain 'O':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0lo_
  • Chain 'P':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lp_
  • Chain 'Q':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0lq_
  • Chain 'R':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lr_
  • Chain 'S':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0ls_
  • Chain 'T':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lt_
  • Chain 'U':
    Compound: protein-U
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0lv_
  • Chain 'W':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lw_
  • Chain 'X':
    Compound: PufX
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: Light-harvesting protein B-875 alpha chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed):
    • PDB 7F0L (0-53)
    Domains in SCOPe 2.08: d7f0ly_
  • Chain 'Z':
    Compound: Antenna pigment protein beta chain
    Species: Rhodobacter sphaeroides [TaxId:1063]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7f0lz_
  • Heterogens: BCL, SPO, BPH, U10, PGV, LDA, FE, LMT, CDL

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0l1 (1:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >7f0l2 (2:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0l2 (2:)
gytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0l3 (3:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >7f0l4 (4:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0l4 (4:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain '5':
    Sequence, based on SEQRES records: (download) 
    >7f0l5 (5:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0l5 (5:)
skfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain '6':
    Sequence, based on SEQRES records: (download) 
    >7f0l6 (6:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0l6 (6:)
gytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain '7':
    Sequence, based on SEQRES records: (download) 
    >7f0l7 (7:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0l7 (7:)
fykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain '8':
    Sequence, based on SEQRES records: (download) 
    >7f0l8 (8:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0l8 (8:)
ltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7f0lA (A:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lA (A:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7f0lB (B:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lB (B:)
dlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lD (D:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7f0lE (E:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lE (E:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lF (F:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7f0lG (G:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lG (G:)
sdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lI (I:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7f0lJ (J:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lJ (J:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lK (K:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7f0lL (L:)
mallsferkyrvpggtlvggnlfdfwvgpfyvgffgvatfffaalgiiliawsavlqgtw
npqlisvyppaleyglggaplakgglwqiiticatgafvswalreveicrklgigyhipf
afafailayltlvlfrpvmmgawgyafpygiwthldwvsntgytygnfhynpahmiaitf
fftnalalalhgalvlsaanpekgkemrtpdhedtffrdlvgysigtlgihrlglllsls
avffsalcmiitgtiwfdqwvdwwqwwvklpwwanipgging

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lL (L:)
allsferkyrvpggtlvggnlfdfwvgpfyvgffgvatfffaalgiiliawsavlqgtwn
pqlisvyppaleyglggaplakgglwqiiticatgafvswalreveicrklgigyhipfa
fafailayltlvlfrpvmmgawgyafpygiwthldwvsntgytygnfhynpahmiaitff
ftnalalalhgalvlsaanpekgkemrtpdhedtffrdlvgysigtlgihrlglllslsa
vffsalcmiitgtiwfdqwvdwwqwwvklpwwanipgging

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7f0lM (M:)
maeyqniftqvqvrgpadlgmtedvnlanrsgvgpfstllgwfgnaqlgpiylgslgvls
lfsglmwfftigiwfwyqagwnpavflrdlfffsleppapeyglsfaaplkegglwlias
ffmfvavwswwgrtylraqalgmgkhtawaflsaiwlwmvlgfirpilmgswseavpygi
fshldwtnnfslvhgnlfynpfhglsiaflygsallfamhgatilavsrfggereleqia
drgtaaeraalfwrwtmgfnatmegihrwaiwmavlvtltggigillsgtvvdnwyvwgq
nhgmapln

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lM (M:)
aeyqniftqvqvrgpadlgmtedvnlanrsgvgpfstllgwfgnaqlgpiylgslgvlsl
fsglmwfftigiwfwyqagwnpavflrdlfffsleppapeyglsfaaplkegglwliasf
fmfvavwswwgrtylraqalgmgkhtawaflsaiwlwmvlgfirpilmgswseavpygif
shldwtnnfslvhgnlfynpfhglsiaflygsallfamhgatilavsrfggereleqiad
rgtaaeraalfwrwtmgfnatmegihrwaiwmavlvtltggigillsgtvvdnwyvwgqn
hgmapl

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >7f0lN (N:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lN (N:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lO (O:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >7f0lP (P:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lP (P:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lQ (Q:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >7f0lR (R:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lR (R:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lS (S:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >7f0lT (T:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lT (T:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'U':
    No sequence available.

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lV (V:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >7f0lW (W:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lW (W:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7f0lY (Y:)
mskfykiwmifdprrvfvaqgvflfllavmihlillstpsynwleisaakynrv

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >7f0lZ (Z:)
madksdlgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf

    Sequence, based on observed residues (ATOM records): (download) 
    >7f0lZ (Z:)
lgytgltdeqaqelhsvymsglwlfsavaivahlavyiwrpwf