PDB entry 7ebc

View 7ebc on RCSB PDB site
Description: Crystal structure of Isocitrate lyase-1 from Saccaromyces cervisiae
Class: lyase
Keywords: Isocitrate lyase, glyoxylate cycle, ubiquitination, LYASE
Deposited on 2021-03-09, released 2021-06-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-23, with a file datestamp of 2021-06-18.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: isocitrate lyase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7ebca_
  • Chain 'B':
    Compound: isocitrate lyase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7ebcb_
  • Chain 'C':
    Compound: isocitrate lyase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7ebcc_
  • Chain 'D':
    Compound: isocitrate lyase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7ebcd_
  • Heterogens: MG, PG4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7ebcA (A:)
hhhhhhmpipvgntkndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtf
ppieypssvmarklfkvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcssta
stsnepgpdladypmdtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidylt
pivadadaghggltavfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnr
lvtirmcadimhsdlivvartdseaatlisstidtrdhyfivgatnpniepfaevlndai
msgasgqeladieqkwcrdaglklfheavideiersalsnkqelikkftskvgpltetsh
reakklakeilgheiffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypd
fqqakefaegvkekfpdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlag
lhtnalavhnfsrdfakdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaqgg
vsataamgtgvtedqfkengvkk

    Sequence, based on observed residues (ATOM records): (download) 
    >7ebcA (A:)
ndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtfppieypssvmarklf
kvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcsstastsnepgpdladypm
dtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidyltpivadadaghgglta
vfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnrlvtirmcadimhsdl
ivvartdseaatlisstidtrdhyfivgatnpniepfaevlndaimsgasgqeladieqk
wcrdaglklfheavideiersalsnkqelikkftskvgpltetshreakklakeilghei
ffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypdfqqakefaegvkekf
pdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlaglhtnalavhnfsrdf
akdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7ebcB (B:)
hhhhhhmpipvgntkndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtf
ppieypssvmarklfkvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcssta
stsnepgpdladypmdtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidylt
pivadadaghggltavfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnr
lvtirmcadimhsdlivvartdseaatlisstidtrdhyfivgatnpniepfaevlndai
msgasgqeladieqkwcrdaglklfheavideiersalsnkqelikkftskvgpltetsh
reakklakeilgheiffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypd
fqqakefaegvkekfpdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlag
lhtnalavhnfsrdfakdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaqgg
vsataamgtgvtedqfkengvkk

    Sequence, based on observed residues (ATOM records): (download) 
    >7ebcB (B:)
ndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtfppieypssvmarklf
kvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcsstastsnepgpdladypm
dtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidyltpivadadaghgglta
vfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnrlvtirmcadimhsdl
ivvartdseaatlisstidtrdhyfivgatnpniepfaevlndaimsgasgqeladieqk
wcrdaglklfheavideiersalsnkqelikkftskvgpltetshreakklakeilghei
ffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypdfqqakefaegvkekf
pdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlaglhtnalavhnfsrdf
akdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaqggvs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7ebcC (C:)
hhhhhhmpipvgntkndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtf
ppieypssvmarklfkvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcssta
stsnepgpdladypmdtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidylt
pivadadaghggltavfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnr
lvtirmcadimhsdlivvartdseaatlisstidtrdhyfivgatnpniepfaevlndai
msgasgqeladieqkwcrdaglklfheavideiersalsnkqelikkftskvgpltetsh
reakklakeilgheiffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypd
fqqakefaegvkekfpdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlag
lhtnalavhnfsrdfakdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaqgg
vsataamgtgvtedqfkengvkk

    Sequence, based on observed residues (ATOM records): (download) 
    >7ebcC (C:)
ndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtfppieypssvmarklf
kvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcsstastsnepgpdladypm
dtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidyltpivadadaghgglta
vfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnrlvtirmcadimhsdl
ivvartdseaatlisstidtrdhyfivgatnpniepfaevlndaimsgasgqeladieqk
wcrdaglklfheavideiersalsnkqelikkftskvgpltetshreakklakeilghei
ffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypdfqqakefaegvkekf
pdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlaglhtnalavhnfsrdf
akdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7ebcD (D:)
hhhhhhmpipvgntkndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtf
ppieypssvmarklfkvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcssta
stsnepgpdladypmdtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidylt
pivadadaghggltavfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnr
lvtirmcadimhsdlivvartdseaatlisstidtrdhyfivgatnpniepfaevlndai
msgasgqeladieqkwcrdaglklfheavideiersalsnkqelikkftskvgpltetsh
reakklakeilgheiffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypd
fqqakefaegvkekfpdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlag
lhtnalavhnfsrdfakdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaqgg
vsataamgtgvtedqfkengvkk

    Sequence, based on observed residues (ATOM records): (download) 
    >7ebcD (D:)
ndfaalqakldadaaeiekwwsdsrwsktkrnysardiavrrgtfppieypssvmarklf
kvlekhhnegtvsktfgaldpvqisqmakyldtiyisgwqcsstastsnepgpdladypm
dtvpnkvehlfkaqlfhdrkqlearskaksqeeldemgapidyltpivadadaghgglta
vfkltkmfiergaagihmedqtstnkkcghmagrcvipvqehvnrlvtirmcadimhsdl
ivvartdseaatlisstidtrdhyfivgatnpniepfaevlndaimsgasgqeladieqk
wcrdaglklfheavideiersalsnkqelikkftskvgpltetshreakklakeilghei
ffdwelprvreglyryrggtqcsimrarafapyadlvwmesnypdfqqakefaegvkekf
pdqwlaynlspsfnwpkamsvdeqhtfiqrlgdlgyiwqfitlaglhtnalavhnfsrdf
akdgmkayaqnvqqremddgvdvlkhqkwsgaeyidgllklaqggvs